Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0779 ATGGACGAGTCATGGGAAAAATGGCTTTCTGATTTGGAAATGGATGAGTGCCATTTATTCAATGAACACGACATTAACTCTCTTGAGGAAGAGTTGCAGGGAGAGAATTCAGAGCAGCCAAAACTATCTTGGGAAAGTCTTTCTTGTGATTCAAATTTCACTTCTGCAGCTACCAACATGGGCAATTCTTCATCTTTGGAAGAGAACACACAACATGCCTCTTATGACAAACCGAATTTCTCGTCCTACATTCTCTCTTTTGAGGACTCCACAGCAGCGCCAAATGCTCCCATAAAAACATGTCGATATCATGGGGAACGTGAACATTCGAAGGAGACCCAAGAAGCATCAAACACTAGAAAGTCCAAGAGGGATAGAAACACTTCTCAGACACAAGATCACATAATTGCcgagaggaagaggagagagaatatCACCAGCATGTTCATAGCACTTTCGGCCATTATTCCTGGATTGAAAAAGATGGACAAGCTGTCTATCCTCAACAACACTATTGATCATGTGAAATATCTTCGGAATCGTGTaaaagatttggaagaagagaacaaaaagagaaagatacaTTTCGTAACGGGCTCCGAAAACAACAAATCCAATGTTACTGCTGTTGGTGACGACTTTTCTGAGATCTCTGATGGCTTGGATAGACCTAACAAGACATTTCCGAAGGTTGAAGCACACGTCTCAGCTAAAGATGTACTTATAAGAGTTATCTGTGACAAACGAAAGGGCATTGTAACGAAGCTACTGTCTATACTTGCAGCTCATAATCTCTCCATTGTTTCTAGCAATGTTTTGCCATTTGGGAATTCTACTCTAAACATTTCCGTCATTGCTAAGGTGGACGGCGAATTCAGCACGACAATGAACGACCTGGTGAAAAATTTGGACGAGGATTTGCTGAAGTGCTGTAATTTGCAACAATAA 948 0.3871 MDESWEKWLSDLEMDECHLFNEHDINSLEEELQGENSEQPKLSWESLSCDSNFTSAATNMGNSSSLEENTQHASYDKPNFSSYILSFEDSTAAPNAPIKTCRYHGEREHSKETQEASNTRKSKRDRNTSQTQDHIIAERKRRENITSMFIALSAIIPGLKKMDKLSILNNTIDHVKYLRNRVKDLEEENKKRKIHFVTGSENNKSNVTAVGDDFSEISDGLDRPNKTFPKVEAHVSAKDVLIRVICDKRKGIVTKLLSILAAHNLSIVSSNVLPFGNSTLNISVIAKVDGEFSTTMNDLVKNLDEDLLKCCNLQQ 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0779 315 PANTHER BHLH TRANSCRIPTION FACTOR 2 313 - -
Ssu2g0779 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 193 IPR036638 GO:0046983
Ssu2g0779 315 SMART finulus 135 184 IPR011598 GO:0046983
Ssu2g0779 315 Coils Coil 168 188 - -
Ssu2g0779 315 MobiDBLite consensus disorder prediction 103 137 - -
Ssu2g0779 315 Pfam Helix-loop-helix DNA-binding domain 132 179 IPR011598 GO:0046983
Ssu2g0779 315 Gene3D - 126 198 IPR036638 GO:0046983
Ssu2g0779 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
Ssu2g0779 315 ProSiteProfiles ACT domain profile. 241 315 IPR002912 -
Ssu2g0779 315 CDD ACT 242 299 - -
Ssu2g0779 315 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 2 313 - -
Ssu2g0779 315 SUPERFAMILY ACT-like 240 303 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0779 Ssu-Chr2 41072092 41079510 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0779 7 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 32.530 1.83e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu2g0779 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0779 - - ccaj:109790958 333.954