Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0777 ATGGACGAGTCATGGGAAAAATGGCTTTCTGATTTGGAAATGGATGAGTGCCATTTATTCAATGAACACGACATTAACTCCCTTGAGGAAGAGTTGAAGGCAGAGAGTTCAGTGCAGCCAGAATTATCTTGGGAAACTCTTTCTTGTGATTCAAATTTCACTGCTGCAGCTACTAACATGGGCAATGCTTCGTCTTTGGAAGAGAACACGCAACATGCGTATTCTGAGAAATCAAATTTCTCGTCCTATATTCTCTCTTTTGAGGACTCCACAGCAGTGCCAAATGCTCCCATAAAAACATGTCGATATCATGGGGAACGTGAACGTTCGAAGGAGACCCGAGAAGAATCAAACACTAGAAAGTCCAAGAGGGATAGAAACACTTCTCAGACACAAGATCACATAATTGCcgagaggaagaggagagaaaatatCACCAGAATGTTCGTAGCACTTTCGGCCATTATTCCTGGATTGAAAAAGATCAGTtcgtaa 495 0.396 MDESWEKWLSDLEMDECHLFNEHDINSLEEELKAESSVQPELSWETLSCDSNFTAAATNMGNASSLEENTQHAYSEKSNFSSYILSFEDSTAVPNAPIKTCRYHGERERSKETREESNTRKSKRDRNTSQTQDHIIAERKRRENITRMFVALSAIIPGLKKISS 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0777 164 MobiDBLite consensus disorder prediction 101 140 - -
Ssu2g0777 164 PANTHER BHLH TRANSCRIPTION FACTOR 2 162 - -
Ssu2g0777 164 MobiDBLite consensus disorder prediction 98 140 - -
Ssu2g0777 164 Gene3D - 104 164 IPR036638 GO:0046983
Ssu2g0777 164 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 160 IPR036638 GO:0046983
Ssu2g0777 164 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 164 IPR011598 GO:0046983
Ssu2g0777 164 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 2 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0777 Ssu-Chr2 41018789 41019402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0777 7 162 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 31.073 4.23e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0777 - - gmx:100815351 155.606