Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0775 ATGAAGTGCTTTTACTATTTCAAAGACAAATCCAAAAACAGTAAGCAAAGGTCAGCACCTGAACTGAAAGAGAAAGGGAAACTCGAGTTTTCAGGGGCTGAAAGGGTCACCAAGTCTTCATGCTCATCTGCAGCATCACCTCGCGGTATACCAGAACTGTATGAGGAGAAGGGTCACAATTTGAGGGTCTTCTCCTTAACGGAGCTCAAGCGTGCAACAAGTGATTTCAGCAGGCTTCTTAAGATAGGAGAAGGTGGATTTGGAAGTGTGTTTAAAGGTTCAATCAAGCCTGTTGATGGGAATGGGGGTCCTATTTTAGTTGCCATCAAAAGGCTTAACAAGGATGCATTACAGGGTCATAAGCAATGGTTGACTGAAGTTCAGTTTCTTGGTGTTGTGGAACACCCAAATCTTGTCAAGCTTATTGGATACTGTGCTTTGGATGATGAAAGAGGGATCCAGAGACTACTCGTGTATGAATACATGCCAAACAAAAGCTTAGAATATCACCTTTTCAATAAAGCATATGATCCTCTTCCTTGGAAAACAAGACTTGAAATAGCACTTGGAGCAGCTCAAGGGTTATCTTATCTGCAtgaagaattagaaattcaGGTGATATATCGAGATTTTAAATCTTCAAATGTATTACTGGATGAAATCTTTAAGCCAAAGCTTTCTGATTTCGGACTTGCTAGGGAGGGACCAGTAGCTGGCGATACACATGTTTCAACAGCTGTGATGGGGACATATGGTTATGCTGCCCCAGACTACATTGAGACAGGCCATCTCACTGCCAAGAGTGATGTGTGGAGTTTTGGTGTGGTGCTATATGAAATACTTACTGGCAGGCGTTCAATGGAAAGAAACAGGCCCAAAACGGAGAAGAAACTATTGGAGTGGGTGAAGCAATACCCTCCTGATAGCAAAAAGTTTGACACTATAATGGATCCGCGACTTCAAGGAGAATATTCCATGAATGGAGCACGAAAAACCGCCAAGCTTGCAGATCATTGCCTGCGCAAGAGTGCAAAAGATCGGCCAACGATGAGTCAGGTGGTAGAGAGATTGAAGCACATAATCCAAGATTCTGATGAAGAACACCCTGCagatgataaaaatattgagGTATCTGAAAATGATCCAGCTGAGCCTGAAGAAAAGCCAAATCAATCAGGCTCTTCAGAGTTATGGAAAAAGAGGATGGAACATCTTGCAAAACTTGGTGAACGTGTGGAGAGTGCTAGTAGAAGAAGATTTATGATCCTTCAGAGAGCCAATGTGTCTTCTTAG 1293 0.4176 MKCFYYFKDKSKNSKQRSAPELKEKGKLEFSGAERVTKSSCSSAASPRGIPELYEEKGHNLRVFSLTELKRATSDFSRLLKIGEGGFGSVFKGSIKPVDGNGGPILVAIKRLNKDALQGHKQWLTEVQFLGVVEHPNLVKLIGYCALDDERGIQRLLVYEYMPNKSLEYHLFNKAYDPLPWKTRLEIALGAAQGLSYLHEELEIQVIYRDFKSSNVLLDEIFKPKLSDFGLAREGPVAGDTHVSTAVMGTYGYAAPDYIETGHLTAKSDVWSFGVVLYEILTGRRSMERNRPKTEKKLLEWVKQYPPDSKKFDTIMDPRLQGEYSMNGARKTAKLADHCLRKSAKDRPTMSQVVERLKHIIQDSDEEHPADDKNIEVSENDPAEPEEKPNQSGSSELWKKRMEHLAKLGERVESASRRRFMILQRANVSS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0775 430 PANTHER OS07G0495150 PROTEIN 26 418 - -
Ssu2g0775 430 MobiDBLite consensus disorder prediction 361 386 - -
Ssu2g0775 430 SUPERFAMILY Protein kinase-like (PK-like) 59 357 IPR011009 -
Ssu2g0775 430 ProSiteProfiles Protein kinase domain profile. 76 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0775 430 ProSitePatterns Protein kinases ATP-binding region signature. 82 110 IPR017441 GO:0005524
Ssu2g0775 430 Gene3D Transferase(Phosphotransferase) domain 1 162 384 - -
Ssu2g0775 430 CDD STKc_IRAK 82 360 - -
Ssu2g0775 430 Pfam Protein tyrosine and serine/threonine kinase 81 357 IPR001245 GO:0004672|GO:0006468
Ssu2g0775 430 Gene3D Phosphorylase Kinase; domain 1 51 161 - -
Ssu2g0775 430 PANTHER OS01G0588500 PROTEIN-RELATED 26 418 - -
Ssu2g0775 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Ssu2g0775 430 MobiDBLite consensus disorder prediction 361 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0775 Ssu-Chr2 40950505 40956218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0775 62 388 Glycoside Hydrolase AT3G07070 46.061 2.81e-92 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu2g0775 PK_Tyr_Ser-Thr 4.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0775 - - gmx:100784625 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0775 2 40950505 40956218 Ssu2g0775 2 40950505 40956218 ECH