Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0757 ATGGCTTCTCCCCCACCCTTGACGCTAAACGTCGTCGGATCAGACACGTTCCCAACCGTTACGACTTCGCCAACGCCGCCGTCGCCACGCCGTTCGTCTCCGTTACAGAACCTCAGTCCCAGCATTCTGATCATCGTAACGGTCCTCGCCGTCACCGTCATCGTCTCTCTCTCGCTCTGTTTCCTCCTCCGTCACTTGAACCGCCGCTGCCTCCGTCGCTTCTCGTCTTCCTCCGCCGCGCCCTCCGCCGCCGCCACCCCGATCTTCGCCTCCAGCCGCCGCATCTCGCCGGAGGTGCCGCACTCCTCCGCCTCCGTCATCGACTCGCTCCCGCTCTTCACGTTCTCCTCCGTCACGCGGCgctccgccgccgccgccgacTGCGCCGTGTGCCTCTCGAAGTTCCGCCACGACGACCTCCTCCGCCTCCTCCCCCTCTGCTGCCACGCCTTCCACGCCGAGTGCATCGACACGTGGCTCCAGTCGAACCTTACGTGTCCGCTCTGCCGCTCCGCCATCGTCGCCGCCGAACCGGACATCGCGAAAATTCTCCGGCCGCCGTCCTCCTCCGCCGGCAGCAGCGACAGCTTCCGCCTCGAGATAGGAAACATTAGCCGCCGCGGAACCGACGGTGGCGCAGCCGACGGCGCCGCCACGAGGTCGCGGTCCTATTCCATTGGATCGTTCGAGTATTTGGTGGACGACGAGTCGGAGGTTCCGTTCAGCCACGCGCGTCGGAGGAGCGGCGATGACGCGAAGGAGTTTCCGGCGCCGGCGGAGGCTCCGGCGACTCAAAATGAGGCCACTCTCGCCGGCGAAGTTGCTGGCGTTAGAAGCTGGCTTAAGGATTACGTGGATAGGGTCTCGGCTTCTATTTCGTCGCGAACGGCGTCGTTTCGAAGCTCTGGAAGGTTCTTCAGTGGCGGGGGGGGAAGTAGCCGTCGAAGCGACGTCGTTCCGGTCGTTGCTGCGGAATACGACTTGGAAGGGAACCGAATTGGGGAGGAGATCAGCGAAATGTTTCGTTGGCTTTCAGGGGTATGA 1044 0.6236 MASPPPLTLNVVGSDTFPTVTTSPTPPSPRRSSPLQNLSPSILIIVTVLAVTVIVSLSLCFLLRHLNRRCLRRFSSSSAAPSAAATPIFASSRRISPEVPHSSASVIDSLPLFTFSSVTRRSAAAADCAVCLSKFRHDDLLRLLPLCCHAFHAECIDTWLQSNLTCPLCRSAIVAAEPDIAKILRPPSSSAGSSDSFRLEIGNISRRGTDGGAADGAATRSRSYSIGSFEYLVDDESEVPFSHARRRSGDDAKEFPAPAEAPATQNEATLAGEVAGVRSWLKDYVDRVSASISSRTASFRSSGRFFSGGGGSSRRSDVVPVVAAEYDLEGNRIGEEISEMFRWLSGV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0757 347 SMART ring_2 128 169 IPR001841 -
Ssu2g0757 347 MobiDBLite consensus disorder prediction 1 35 - -
Ssu2g0757 347 MobiDBLite consensus disorder prediction 242 265 - -
Ssu2g0757 347 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 2 314 - -
Ssu2g0757 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 175 IPR013083 -
Ssu2g0757 347 CDD mRING-H2-C3H2C2D_ZSWM2 128 170 - -
Ssu2g0757 347 Pfam Ring finger domain 127 170 IPR001841 -
Ssu2g0757 347 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Ssu2g0757 347 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 314 - -
Ssu2g0757 347 SUPERFAMILY RING/U-box 107 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0757 Ssu-Chr2 40480890 40481933 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0757 22 177 C3H Transcription Factor Family AT4G28890 36.025 8.90e-23 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0757 K10663 - gmx:100817751 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0757 2 40480890 40481933 Ssu2g0757 2 40480890 40481933 ECH