Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0693 ATGGAGCACGAGGAAAAAACCATCACCACCAAGCTCGTGAAATCTGCGTCCTTCCCCAAAGTTGTTCGCATTTCGGTTACTGATCACAACGCCACGGACTCGTCCAGCGACGAAGAAGGAGCAGAAGCGCTTCTCCACCGCCCGAGAGTCAAGAGAGTGGTTAATGAGATAAGAATTGTGTGCGTCACCAACAAGAAAAAACGAAACAATGACGTTAGTGAATGTTGCTATGCAtccaaagaagagaagaaacgAAAGAAGTTTCGCGGAGTTCGGCAGCGGCCTTGGGGCCGGTGGGCCGCGGAGATTAGAGACCCTTTGCGGCGGACGAGAGTGTGGCTTGGCACCTACGACACTGCCGAAGAGGCCGCCATGGTTTATGACAGAGCCGCTATTAGTTTTAGAGGCGCTGACGCTGTTACCAACTTCATCAAACCGCCGTTGAAAGACGAGGCCGCGTCTCTTGATTGTGATGATGTTATTAATGGAACGAGTTGTGCATGCGCTTCACCCACTTCTGTTCTTGTGTTTAAGCCTTGGACGGAGCCACTGTCTTTGGAAGAAACGTTTGAAGAAGAAGATGTCTTTAAAGGGTTAACTGGTGATGATGGTCGTTTGTTTTCAGATCATGATGCACTTTATGAACCTCTTCCTATGATGTCTTCCAACGTTGATGTTCCGTTTCGACTAGATGAGGATCTTGAGTCATGTAAATGGGATGTAGATTATTATTTCGGTGATGATCTTTCGTTACAGTGA 759 0.4664 MEHEEKTITTKLVKSASFPKVVRISVTDHNATDSSSDEEGAEALLHRPRVKRVVNEIRIVCVTNKKKRNNDVSECCYASKEEKKRKKFRGVRQRPWGRWAAEIRDPLRRTRVWLGTYDTAEEAAMVYDRAAISFRGADAVTNFIKPPLKDEAASLDCDDVINGTSCACASPTSVLVFKPWTEPLSLEETFEEEDVFKGLTGDDGRLFSDHDALYEPLPMMSSNVDVPFRLDEDLESCKWDVDYYFGDDLSLQ 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0693 252 Pfam AP2 domain 87 136 IPR001471 GO:0003700|GO:0006355
Ssu2g0693 252 PRINTS Ethylene responsive element binding protein signature 110 126 IPR001471 GO:0003700|GO:0006355
Ssu2g0693 252 PRINTS Ethylene responsive element binding protein signature 88 99 IPR001471 GO:0003700|GO:0006355
Ssu2g0693 252 PANTHER - 12 81 - -
Ssu2g0693 252 CDD AP2 90 143 IPR001471 GO:0003700|GO:0006355
Ssu2g0693 252 SMART rav1_2 87 151 IPR001471 GO:0003700|GO:0006355
Ssu2g0693 252 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 81 - -
Ssu2g0693 252 PANTHER - 80 251 - -
Ssu2g0693 252 Gene3D AP2/ERF domain 86 145 IPR036955 GO:0003700|GO:0006355
Ssu2g0693 252 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 80 251 - -
Ssu2g0693 252 ProSiteProfiles AP2/ERF domain profile. 87 144 IPR001471 GO:0003700|GO:0006355
Ssu2g0693 252 SUPERFAMILY DNA-binding domain 87 143 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0693 Ssu-Chr2 38142002 38142760 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0693 4 184 AP2-EREBP Transcription Factor Family AT4G27950 43.396 1.29e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu2g0693 AP2 9.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0693 - - gmx:100815537 316.235