Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0676 ATGATGTCtcatctttcaaaaaataacttTACTCCTTTCAATGTCAATGTTCTGGTTGTTGATGGCGATGCTATTGCACTGAACATAACAATGGAAATACTAACTTCCTTGAATTACAAAGTGATTTCAATTGACAATAGTGAAGAAATCCAACGAAAAGCTGTAATGTCTGGTGTAATgcgttatattttaaaaccagCAAAACCAGATGACCTCATAGGTATTTGGCAATTCGCAATATCAGTAATGAAAGATGAGATGCCAACTAACACAAATATCATTGGAGATAGCATTGATGAATCAAGTAGTGAGAATAAACACCACAAAGAATTAAGTTGTACATCATTTACACAAGAAGAAAGCAGGGCTGAGCAAAAAAGTGATGATATGGAAGAGTCATCGATGAATACTTGGAAAGATAATGGGTCTTCTACCCTTAAGAAGACCAAAATATTTTGGACTAAAGATCTTCAAAGTCGATTCGTGAAAGCCATAGACAAGATTGGCTTAGAGAaTGCAGTtccaaaaaatattcttaaagcAATGAATGTCGAAGGGCTTACTAGGGACAATGTGGCAAGTCATTTGCAGAAATATCGACTTTACTTAGGACGAGTTGAAAGAATATTTGCCTCAGTTATAAAGAAAGCAAATGAAGACAATGATGTCTTTTTGTCTAAGATGGCATCAACACATTCGTCATTGTTGTTGAAACTTATTCAAGatgatttggaaaaaaatttgaagcaaaataagaggaaaaatcTAGAATATTTAGAATCTAGcgacatatatatatctcaCTTAAGATCCAAACTATCCTGGTCGTTGAGTAACTCTGACTCTAAGCATTATCGCTATAGCAAAAtgtatccttattttaaaatgggtCTTCCATCAGGCAAAACCAATAACCTTGGTATCACAAATAATACAACAATACCATACCATCCATATCCTAATGTTCATGATGCATATCAACCAAGAAGTGCTTCAAATTTTGTGCAGAATATTTATAATGAGACATCTCAAAACCCCCCAATTAGCCCTTCCGGATTAGTTAGTTACAATTTTAACAAACTTGGATTAGGTCAACCATCAAGTTCAAATGTTACTAATGGTAGTGATGTAACATCTTTCCAAGGAAGGGCTAGGTCAAGCCAAATTCAATCGAATGGAAAATGCGTTCTGAATGCTTTTGACCATAGGCATGCCATTATGAATGATAAAAGCACTAATAGTGTGGCTTCTATAGGGTTGTTGAAACCAAATTCTACTAGTTTGGTTGGGGGAGTAGGGTCTACTACTAGTGAGGTTTATAGCATAAACCAAACTTTACCAAGATCAATAGAGGCCATTAATACTGTTGGAAATATTTTCATGGGAGGAAACTTATTTCAGCCCCAACAAcaccaacaaatttataatcaagGGTATCATCAAACTCTTGCAACTGTTGACAATAATTTTGCTTCTCAAGTAGCATCTAATAAAGTCCCCATGCAGTTAGAATGGGACTATGGCTCCATTGAATCCATTTTTGATTATATGGAGTAA 1557 0.3218 MMSHLSKNNFTPFNVNVLVVDGDAIALNITMEILTSLNYKVISIDNSEEIQRKAVMSGVMRYILKPAKPDDLIGIWQFAISVMKDEMPTNTNIIGDSIDESSSENKHHKELSCTSFTQEESRAEQKSDDMEESSMNTWKDNGSSTLKKTKIFWTKDLQSRFVKAIDKIGLENAVPKNILKAMNVEGLTRDNVASHLQKYRLYLGRVERIFASVIKKANEDNDVFLSKMASTHSSLLLKLIQDDLEKNLKQNKRKNLEYLESSDIYISHLRSKLSWSLSNSDSKHYRYSKMYPYFKMGLPSGKTNNLGITNNTTIPYHPYPNVHDAYQPRSASNFVQNIYNETSQNPPISPSGLVSYNFNKLGLGQPSSSNVTNGSDVTSFQGRARSSQIQSNGKCVLNAFDHRHAIMNDKSTNSVASIGLLKPNSTSLVGGVGSTTSEVYSINQTLPRSIEAINTVGNIFMGGNLFQPQQHQQIYNQGYHQTLATVDNNFASQVASNKVPMQLEWDYGSIESIFDYME 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0676 518 Gene3D - 145 207 - -
Ssu2g0676 518 PANTHER RESPONSE REGULATOR 23-RELATED 41 476 - -
Ssu2g0676 518 SUPERFAMILY CheY-like 15 81 IPR011006 -
Ssu2g0676 518 MobiDBLite consensus disorder prediction 100 135 - -
Ssu2g0676 518 SUPERFAMILY Homeodomain-like 145 204 IPR009057 -
Ssu2g0676 518 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 148 201 IPR006447 GO:0003677
Ssu2g0676 518 PANTHER TWO-COMPONENT RESPONSE REGULATOR 41 476 IPR045279 GO:0009736
Ssu2g0676 518 MobiDBLite consensus disorder prediction 93 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0676 Ssu-Chr2 37532222 37540126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0676 14 206 Response Regulator Gene Family AT3G16857 31.193 4.02e-27 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu2g0676 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0676 - K14491 aprc:113850659 435.647