Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0665 ATGGCCAAGTCATGTTGGACTCTTTGCAAGTGTTTGGTCTTACTCCAGATTTTCCTGTGCTTTGTGCCAACACAATCAGCACCTGAAAGTGCCATTGTAACACAGGTTCCTGGCTTCAATGGCACTCTACCTTCCAAGCACTATGCTGGGTATGTGACAGTGGATGAGAGTCATGGAAGGAACTTGTATTACTATTTTGTTGCATCAGAGGGTAAACCTTCTGAGGACCCTGTGGTTCTGTGGCTTAATGGGGGACCAGGCTGCTCTAGCTTTGATGGATTCATATATGAGCATGGTCCTTTTAATTTTGAGGCAGCAAAGACAAAGGGGGGCCTGCCCACACTGCACCTCAATCCATACAGCTGGTCAAAGGTTTCCAGCGTTATATATTTGGATTCTCCTGCTGGTGTCGGGTTTTCATACTCGGAGAATgaaactgattacataactggAGACATAAAGACTGCCTCTGATACACATGCATTTCTCCTTAAGTGGTTTGAACTATACCCCGAGTTCCTTTCCAACCCGTTCTTCATTGCTGGAGAGTCATATGCAGGAGTTTATGTGCCTACTCTTGCTTCTGAAGTAGTGAAAGGAATCGATGCTGATGTGAAGCCCAAACTGAATTTCAAGGGTTACATGGTGGGAAATGGTGTAACAGATGAACAATTTGATGGCAATGCTCTTGTTCCATTTGTGCATGGGATGGGACTTATCTCAGATGATCTGTTTGAGGAGGTTAACATTGAGTGCAATGGGAATTTTTATAATCCAACAAGTAATAATTGTTCTAGCAAGCTTCAAAAAGTTGACGAGGACGTTGCTGAGataaacatatataacattCTAGAACCGTGCTATCATGGCACAGAGACAGAGAAGATTACTGCATCCTATATTAGATTGCCATCTAGCTTCCAGAAGTTAGGTGACACTGAAAGACCTTTTCCCGTGAGGAAAAGAATGTTTGGTCGTGCTTGGCCCCTAAGAGCACCTGTGAGAGATGGAATTGTACCAACTTGGCCACAGCTGATGAGTAGTAACCATGCTCCACCATGCACTGACGATGAGATTGCAAACTCATGGTTGAACAACAAAGAAGTCAGGAAAGCAATCCATACTGCACAGGAAAGTGTGGTTAGTAGTTGGGATTTATGCACAGACACAATTTCCTTTGATCATGATGCTGGGAGCATGATCAAGTACCACAAGAACTTAACTTCCAGAGGTTATCGAGCACTTATATTCAGCGGCGATCATGACATGTGTGTTCCATTTACGGGGAGTCAAGCGTGGACAAGATCAATTGGATACAAGATTGTTGATGAATGGAGGCCTTGGTCATCCAATGGCCAAGTTGCCGGGTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCATAAAGGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTAGACTTTTACAAACGCTTTCTCGCTGGACTGCCAATGTAA 1497 0.4302 MAKSCWTLCKCLVLLQIFLCFVPTQSAPESAIVTQVPGFNGTLPSKHYAGYVTVDESHGRNLYYYFVASEGKPSEDPVVLWLNGGPGCSSFDGFIYEHGPFNFEAAKTKGGLPTLHLNPYSWSKVSSVIYLDSPAGVGFSYSENETDYITGDIKTASDTHAFLLKWFELYPEFLSNPFFIAGESYAGVYVPTLASEVVKGIDADVKPKLNFKGYMVGNGVTDEQFDGNALVPFVHGMGLISDDLFEEVNIECNGNFYNPTSNNCSSKLQKVDEDVAEINIYNILEPCYHGTETEKITASYIRLPSSFQKLGDTERPFPVRKRMFGRAWPLRAPVRDGIVPTWPQLMSSNHAPPCTDDEIANSWLNNKEVRKAIHTAQESVVSSWDLCTDTISFDHDAGSMIKYHKNLTSRGYRALIFSGDHDMCVPFTGSQAWTRSIGYKIVDEWRPWSSNGQVAGYTQGYDKNLTFLTIKGSGHTVPEYKPREALDFYKRFLAGLPM 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0665 498 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Ssu2g0665 498 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Ssu2g0665 498 PRINTS Carboxypeptidase C serine protease (S10) family signature 465 478 IPR001563 GO:0004185|GO:0006508
Ssu2g0665 498 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Ssu2g0665 498 Pfam Serine carboxypeptidase 37 494 IPR001563 GO:0004185|GO:0006508
Ssu2g0665 498 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 20 19 495 - -
Ssu2g0665 498 ProSitePatterns Serine carboxypeptidases, serine active site. 180 187 IPR018202 GO:0004185
Ssu2g0665 498 Gene3D alpha/beta hydrolase 25 316 IPR029058 -
Ssu2g0665 498 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 19 495 IPR001563 GO:0004185|GO:0006508
Ssu2g0665 498 ProSitePatterns Serine carboxypeptidases, histidine active site. 465 482 IPR033124 GO:0004185
Ssu2g0665 498 SUPERFAMILY alpha/beta-Hydrolases 33 497 IPR029058 -
Ssu2g0665 498 Gene3D - 351 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0665 Ssu-Chr2 37361504 37368865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0665 359 498 Calmodulin-binding Proteins AT2G22960 47.143 1.81e-40 142