LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g0663	ATGGCTTCCCCTTTGCTTCCCTTTCTCTTCTGCTCAATAATTCTGTTACCCTTTCTACCCGTCAGTGTTGTAGCCCAAACAAAAAGCAAATTAACCATTGGTGACTCTCATACTGCAACAACCAGCACCTCCCGATGGTTGGTTTCATCACCTTCTGGTGACTTTGCCTTTGGTTTCCTCCCACTTGAGGACACTCCTGATCTTTTCATACTTTGCATTTGGTATGCTAAGATTTCAAACAAAACCATTGTTTGGTTTGCCAATAGGGACAACCCTGCACCCGAGGACTCAAAAGTGGAGCTTACTGCTGATGATGGGTTGGTGCTCACTGCCCCAAATGGTAGCCAGTTATGGAATACTGGGGGCGTCAGTGTTAGTGTTTCTAGTGGTGTGTTTAATGACACCGGCAACCTTGTGCTTCAGGATGGTGACTCCAACAGTGTTTGGGAGAGTTTCACGGACTATAGGGACACCTTGCTGCCCTCTCAGACTATGGAAAGGGGTCAAAAGCTTTCTTCTAAACTTAGGGAGAATGATTTCAACAAGGGCAGGTTTGAGctcttttttcaaaatgatgGTAATCTTGTGATGCGCTCTATAAATTTGCCTTCTGGGTATGCTAATGAAAACTACTATCAAAGTGGAACCATTGAGTCCAACACATCTAGTGCTGGAACTCAATTGGTTTTTGATAGGTCAGGAGACATGTATATTTTGAGGGAGAACAATGAAATATACAACTTGTCAGGAGGGGGTAGTACTAGTAGAGTTTCTACCTCTCAATTTTACCTTAGAGCAACTCTTGATTTTGATGGGGTGTTCACACTCTATCGACATCCAAAGGGTTCTTCTGGCAGTGAAGGTTGGACCCCAGTGTGGTCTCATCCAGATAATATCTGTAAGGATAATCTTGCTAGTGGAGGTAGTGGTGTTTGTGGATATAATAGCATCTGCAATTTGGGAGATGATAAGAGGCCAATCTGTCAGTGCCCAAAATGGTATTCACTGGTTGATCCTAATGACCCCTACGGTAGCTGCAAACCAGATTTTGTACAAGCGTGTGTTGTAGATGAGCTTAGTAAAAGACAGGATCTATATGATTTTGAGGTGTTGACAGATACTGATTGGCCTCTTTCAGATTATGTGCTTCAAAAACCCTTCACCGATGAACTATGCAGACAATCTTGTATGGAGGATTGTATGTGTTCTGTTGCCATTTTCAGGCTAGGTGACAGCTGCTGGAAGAAGAAGTTGCCACTTTCAAATGGTAGAGTTGATGCCACACTTAATGGAGCAAAGGCCTTCATGAAAGTGAGGAAAGACAACTCCTCCTTGGCTGTTCCTCCAATCATTGTGAACAAGAATAATAGTAACACATTGATTTTGGTTGGCTCAGTGCTTTTGGGTGGTTCTGCTTTTCTCAATCTCATATTGGTTGGAGCAATCTGCTTGAGCACTTCCTTTGTTTTACGGTACAAGAAGAAGCTTAGAAGAGTTGGCAAAAGTGACACTGCTGTGGAAACCAATTTGCGTTGCTTCACTTATGAGGAACTCGAAGAAGCTACCAATGGCTTTGACAAAGTGCTAGGAAAGGGAGCTTTTGGTATTGTGTATGAAGGAGTCATCAACATGGGTTCCATTACTCTTGTGGCGGTAAAAAGGTTGAACACTTTTCTCTTGGAAGAGGTTCAGAAGGAATTCAAGAATGAACTGAATGTCATTGGCCTCACTCACCATAAGAACTTGGTTCGCTTACTTGGATTTTGTGAGGCAGAATCAGAAAGGTTACTGGTTTATGAGTACATGAGCAATGGCACTTTAGCAAGTCTTCTTTTCAATGTGGAGAAACCAAGTTGGAAACTGAGGCTACAAATTGCAATTGGGGTTGCTAGAGGACTTCTATATTTGCATGAAGAGTGCAGCACACAGATCATCCATTGTGACATAAAGCCTCAAAACATACTCCTTGATGATTACTATAATGCAAGGATTTCTGACTTTGGATTGTCCAAGCTTTTGAACATGAACCAAAGCAGAACCAACACTGCCATAAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTCAAAAACATGCCAATCACGGCTAAAGTGGATGTCTATAGTTATGGGGTGCTGCTACTTGAGATAGTTTCATGCAGAAAAAGCGTAGAATCTGAGGCAGAAGATGAAGAGAAAGCAATCCTAACTGAATGGGCTTATGACTGCTACGTTGAAGGTGCTCTTCATGCCTTGGTTGAGAATGACAAAGAGGCATTGGATGACATGGAGATGGTGGAGAAGTTTGTAATGATTGCCCTTTGGTGTGTCCAAGAGGATCCTGGTCTTAGACCAACCATGAGAAACGTGACACAGATGCTTGAAGGTGTTGTTGAAGTGCAAGTGCCACCATGCCCATCACAAATTAGTATTGAATATTCCCTAAATTAA	2451	0.4231	MASPLLPFLFCSIILLPFLPVSVVAQTKSKLTIGDSHTATTSTSRWLVSSPSGDFAFGFLPLEDTPDLFILCIWYAKISNKTIVWFANRDNPAPEDSKVELTADDGLVLTAPNGSQLWNTGGVSVSVSSGVFNDTGNLVLQDGDSNSVWESFTDYRDTLLPSQTMERGQKLSSKLRENDFNKGRFELFFQNDGNLVMRSINLPSGYANENYYQSGTIESNTSSAGTQLVFDRSGDMYILRENNEIYNLSGGGSTSRVSTSQFYLRATLDFDGVFTLYRHPKGSSGSEGWTPVWSHPDNICKDNLASGGSGVCGYNSICNLGDDKRPICQCPKWYSLVDPNDPYGSCKPDFVQACVVDELSKRQDLYDFEVLTDTDWPLSDYVLQKPFTDELCRQSCMEDCMCSVAIFRLGDSCWKKKLPLSNGRVDATLNGAKAFMKVRKDNSSLAVPPIIVNKNNSNTLILVGSVLLGGSAFLNLILVGAICLSTSFVLRYKKKLRRVGKSDTAVETNLRCFTYEELEEATNGFDKVLGKGAFGIVYEGVINMGSITLVAVKRLNTFLLEEVQKEFKNELNVIGLTHHKNLVRLLGFCEAESERLLVYEYMSNGTLASLLFNVEKPSWKLRLQIAIGVARGLLYLHEECSTQIIHCDIKPQNILLDDYYNARISDFGLSKLLNMNQSRTNTAIRGTKGYVALEWFKNMPITAKVDVYSYGVLLLEIVSCRKSVESEAEDEEKAILTEWAYDCYVEGALHALVENDKEALDDMEMVEKFVMIALWCVQEDPGLRPTMRNVTQMLEGVVEVQVPPCPSQISIEYSLN	816

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu2g0663	816	SUPERFAMILY	Protein kinase-like (PK-like)	506	795	IPR011009	-
	Ssu2g0663	816	ProSiteProfiles	Bulb-type lectin domain profile.	32	153	IPR001480	-
	Ssu2g0663	816	Gene3D	Transferase(Phosphotransferase) domain 1	602	802	-	-
	Ssu2g0663	816	ProSitePatterns	Protein kinases ATP-binding region signature.	529	553	IPR017441	GO:0005524
	Ssu2g0663	816	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	25	810	-	-
	Ssu2g0663	816	Gene3D	-	23	155	IPR036426	-
	Ssu2g0663	816	CDD	B_lectin	42	153	IPR001480	-
	Ssu2g0663	816	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1	25	810	-	-
	Ssu2g0663	816	PIRSF	SRK	1	815	IPR024171	GO:0004674
	Ssu2g0663	816	SMART	blect_4	38	155	IPR001480	-
	Ssu2g0663	816	Pfam	Protein kinase domain	526	792	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g0663	816	CDD	STKc_IRAK	529	796	-	-
	Ssu2g0663	816	Pfam	D-mannose binding lectin	82	169	IPR001480	-
	Ssu2g0663	816	Gene3D	-	156	304	-	-
	Ssu2g0663	816	SMART	serkin_6	523	794	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g0663	816	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	644	656	IPR008271	GO:0004672\|GO:0006468
	Ssu2g0663	816	SUPERFAMILY	alpha-D-mannose-specific plant lectins	69	216	IPR036426	-
	Ssu2g0663	816	Gene3D	Phosphorylase Kinase; domain 1	497	601	-	-
	Ssu2g0663	816	ProSiteProfiles	Protein kinase domain profile.	523	798	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g0663	Ssu-Chr2	37322992	37325442	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g0663	509	806	Receptor kinase-like Gene Family	AT1G60800	41.009	1.70e-71	243

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Ssu2g0663		Pkinase	3.3e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g0663	-		-	gmx:100815462	1405.96