Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0646 ATGAACGACGGCGAGAGCCGCCAAAACGACTCCCCACGATCACTCGATTTCGAAAGCCTGAAAGTTGTCTCCGCCGTGGGGCGCGGCGCCAAGGGCGTCGTGTTCCTCGCGAGGACCGGTGACCGGTCGTCGGACGAGTGCGTTGCTCTGAAAGTGATCTCGAAGGCCCTGATCCATCAGAAGACGGCGAAAAACGACGAGGGCGAGTACAAGAGGGTGTCGTTCGAAGAGCAAGTGCTAAGTCGTTTCGATCACCCGCTTTTGCCGCGGCTAAGAGGGGTTTTCGAAACCGACAAAGTCGTTGGGTTCGCCATTGATTACTGTCACGGTGGCACCCTCCATTCTCTGAGGAAGAAACAGACTGAGAAAATGTTCTCCGACGATACTATCAGGTTTTACGCTGTGGAATTGGTTCTCGCATTGGAGTATTTGCACAATTTGGGAATAGTGTACAGAGATTTAAAGCCAGACAATGTGATGATTCAAGAAAATGGTCACATAATGCTTGTGGATTTCGATCTCTCCAAAAAGCTAAATCCTAAATCCCCTCAATCATCGAATCGCAACCCGTCCCCGAGTCCTAACTCAGAGAAACGCTTGAGGAAGCAACAATCAATGCGGTTCAGCTGTTTCTGTAACTCGGGCATCTCGCCGTGTGACTCGGACTGGGAGCCCCACTCAGCTCGTGGGACCGAGTCCGACTCGATGGAAAAGTCAAACTCGTTCGTTGGAACGGAAGAGTACGTGCCACCTGAAATGGTATTAGGGAAAGGTCATGCGTTCAGTGTTGATTGGTGGTCATTCGGGGTCGTTTTGTACGAAATGTTATACGGAACGACGCCATTTAAAGGCGTGAATCGGAAGGAAACGTTTTATCGGGTTTTGACGAAGGAGCCAGAGTTAACGGGGGAGAAGACAGCGTTAAGGGATTTGATTGGGAGATTGCTGGAGAAAGATCCTGATCGTCGAATCCCGGTGGATGAAATCAAGGGCCACGATTTCTTCAAAGGGGTTAAGTGGGACACGGTGTTGCACATTGCTAGGCCACCTTATATTCCAGAAAATGAGGTTGAGGACAAAGCGGGGTTTAGCAAAAACGATGTGGAAGTGTTTGTGGACGAGGTGTTTTTTCCCGAGAATGATGATGGCGaagagaaaactaaaaatgtGTTGGAAAAGAAGGGGAATGGTGAGAATAACAAAACCGCATGGGTTGATGAATTGAGTCACATTCCCACTGAGAAGaatgatgattttttaattttttga 1269 0.4807 MNDGESRQNDSPRSLDFESLKVVSAVGRGAKGVVFLARTGDRSSDECVALKVISKALIHQKTAKNDEGEYKRVSFEEQVLSRFDHPLLPRLRGVFETDKVVGFAIDYCHGGTLHSLRKKQTEKMFSDDTIRFYAVELVLALEYLHNLGIVYRDLKPDNVMIQENGHIMLVDFDLSKKLNPKSPQSSNRNPSPSPNSEKRLRKQQSMRFSCFCNSGISPCDSDWEPHSARGTESDSMEKSNSFVGTEEYVPPEMVLGKGHAFSVDWWSFGVVLYEMLYGTTPFKGVNRKETFYRVLTKEPELTGEKTALRDLIGRLLEKDPDRRIPVDEIKGHDFFKGVKWDTVLHIARPPYIPENEVEDKAGFSKNDVEVFVDEVFFPENDDGEEKTKNVLEKKGNGENNKTAWVDELSHIPTEKNDDFLIF 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0646 422 Gene3D Transferase(Phosphotransferase) domain 1 234 354 - -
Ssu2g0646 422 Gene3D Transferase(Phosphotransferase) domain 1 112 182 - -
Ssu2g0646 422 SUPERFAMILY Protein kinase-like (PK-like) 20 357 IPR011009 -
Ssu2g0646 422 Gene3D Phosphorylase Kinase; domain 1 20 111 - -
Ssu2g0646 422 ProSiteProfiles AGC-kinase C-terminal domain profile. 336 422 IPR000961 GO:0004674|GO:0005524|GO:0006468
Ssu2g0646 422 SMART serkin_6 20 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0646 422 MobiDBLite consensus disorder prediction 179 199 - -
Ssu2g0646 422 PANTHER FLIPPASE KINASE 1-RELATED 3 398 - -
Ssu2g0646 422 Pfam Protein kinase domain 235 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0646 422 Pfam Protein kinase domain 22 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0646 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Ssu2g0646 422 ProSiteProfiles Protein kinase domain profile. 20 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0646 422 PANTHER SERINE/THREONINE-KINASE OXI1-LIKE PROTEIN 3 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0646 Ssu-Chr2 36575220 36577564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0646 1 422 AGC Kinase Gene Family AT3G25250 56.364 1.55e-155 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Ssu2g0646 Pkinase 3.8e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0646 K20714 - gmx:100785773 653.284