LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g0646	ATGAACGACGGCGAGAGCCGCCAAAACGACTCCCCACGATCACTCGATTTCGAAAGCCTGAAAGTTGTCTCCGCCGTGGGGCGCGGCGCCAAGGGCGTCGTGTTCCTCGCGAGGACCGGTGACCGGTCGTCGGACGAGTGCGTTGCTCTGAAAGTGATCTCGAAGGCCCTGATCCATCAGAAGACGGCGAAAAACGACGAGGGCGAGTACAAGAGGGTGTCGTTCGAAGAGCAAGTGCTAAGTCGTTTCGATCACCCGCTTTTGCCGCGGCTAAGAGGGGTTTTCGAAACCGACAAAGTCGTTGGGTTCGCCATTGATTACTGTCACGGTGGCACCCTCCATTCTCTGAGGAAGAAACAGACTGAGAAAATGTTCTCCGACGATACTATCAGGTTTTACGCTGTGGAATTGGTTCTCGCATTGGAGTATTTGCACAATTTGGGAATAGTGTACAGAGATTTAAAGCCAGACAATGTGATGATTCAAGAAAATGGTCACATAATGCTTGTGGATTTCGATCTCTCCAAAAAGCTAAATCCTAAATCCCCTCAATCATCGAATCGCAACCCGTCCCCGAGTCCTAACTCAGAGAAACGCTTGAGGAAGCAACAATCAATGCGGTTCAGCTGTTTCTGTAACTCGGGCATCTCGCCGTGTGACTCGGACTGGGAGCCCCACTCAGCTCGTGGGACCGAGTCCGACTCGATGGAAAAGTCAAACTCGTTCGTTGGAACGGAAGAGTACGTGCCACCTGAAATGGTATTAGGGAAAGGTCATGCGTTCAGTGTTGATTGGTGGTCATTCGGGGTCGTTTTGTACGAAATGTTATACGGAACGACGCCATTTAAAGGCGTGAATCGGAAGGAAACGTTTTATCGGGTTTTGACGAAGGAGCCAGAGTTAACGGGGGAGAAGACAGCGTTAAGGGATTTGATTGGGAGATTGCTGGAGAAAGATCCTGATCGTCGAATCCCGGTGGATGAAATCAAGGGCCACGATTTCTTCAAAGGGGTTAAGTGGGACACGGTGTTGCACATTGCTAGGCCACCTTATATTCCAGAAAATGAGGTTGAGGACAAAGCGGGGTTTAGCAAAAACGATGTGGAAGTGTTTGTGGACGAGGTGTTTTTTCCCGAGAATGATGATGGCGaagagaaaactaaaaatgtGTTGGAAAAGAAGGGGAATGGTGAGAATAACAAAACCGCATGGGTTGATGAATTGAGTCACATTCCCACTGAGAAGaatgatgattttttaattttttga	1269	0.4807	MNDGESRQNDSPRSLDFESLKVVSAVGRGAKGVVFLARTGDRSSDECVALKVISKALIHQKTAKNDEGEYKRVSFEEQVLSRFDHPLLPRLRGVFETDKVVGFAIDYCHGGTLHSLRKKQTEKMFSDDTIRFYAVELVLALEYLHNLGIVYRDLKPDNVMIQENGHIMLVDFDLSKKLNPKSPQSSNRNPSPSPNSEKRLRKQQSMRFSCFCNSGISPCDSDWEPHSARGTESDSMEKSNSFVGTEEYVPPEMVLGKGHAFSVDWWSFGVVLYEMLYGTTPFKGVNRKETFYRVLTKEPELTGEKTALRDLIGRLLEKDPDRRIPVDEIKGHDFFKGVKWDTVLHIARPPYIPENEVEDKAGFSKNDVEVFVDEVFFPENDDGEEKTKNVLEKKGNGENNKTAWVDELSHIPTEKNDDFLIF	422

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ssu2g0646	422	Gene3D	Transferase(Phosphotransferase) domain 1	234	354	-	-
Ssu2g0646	422	Gene3D	Transferase(Phosphotransferase) domain 1	112	182	-	-
Ssu2g0646	422	SUPERFAMILY	Protein kinase-like (PK-like)	20	357	IPR011009	-
Ssu2g0646	422	Gene3D	Phosphorylase Kinase; domain 1	20	111	-	-
Ssu2g0646	422	ProSiteProfiles	AGC-kinase C-terminal domain profile.	336	422	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
Ssu2g0646	422	SMART	serkin_6	20	335	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Ssu2g0646	422	MobiDBLite	consensus disorder prediction	179	199	-	-
Ssu2g0646	422	PANTHER	FLIPPASE KINASE 1-RELATED	3	398	-	-
Ssu2g0646	422	Pfam	Protein kinase domain	235	335	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Ssu2g0646	422	Pfam	Protein kinase domain	22	184	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g0646	Ssu-Chr2	36575220	36577564	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g0646	1	422	AGC Kinase Gene Family	AT3G25250	56.364	1.55e-155	444

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Ssu2g0646		Pkinase	3.8e-33	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g0646	K20714		-	gmx:100785773	653.284

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