Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0641 ATGGGGCCAAACGCTGCGGCGGCGAAACAAGCGGAGAAGCTCAGAATTGACGGAAACACTTACTTCAAAAAAGACCGTTTCGGAGCCGCCATCGACGCTTACACCGAGGCAATTACGCTGTGCCCTAATGTTCCGGTCTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAATGATTGGGAGAGAGTAGAGGAAGATTCTCGGAGAGCAATTCAGTTGGACAGCAATTCGGTTAAGGCCCACTATATGTTGGGGCTCACATTGCTACGGAAACAAGAATCTGCCAAGGGAATCAAAGAATTGGAGAAGGCTTTGGATCTTGGGAGAGGCGCCAATCCCAAGGGTTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGCAAAATACCACGAGTGGGAACGATCATCGTCCAAACGATCATGGGAATTGCAGAGCTTGAAAGAAGCTTGTGAGTCTGCTCTGAAGGAAAAACATTTTCTCGATGTCTCCGAAATGGAAGGTTTTATAGATGATGCTACTACTTCCCATTTGGAACAGTTAGAGGCTTTAGAAAGAGTCTTCAATAAAGCTGCAGAGGCTGACACACCTACTGAGGTGCCAGATTATTTATGCTGTAGAATCACACTCGATATTTTTCATGATCCTGTAATCACTCCATGCGGGCTTACATATGAGAGAGCAGTGATTCTTGAACATCTTGAGAAGGTGGGTAAATTTGACCCAATTACGCGGGAACCACTTGATCCATCACAGTTAGTACCAAACTTGGCCATTAAGGAAGCGGTCGAGGCATTCTTGGACAAACATGGGTGGGCCTACAAGGTAGATTAA 837 0.4636 MGPNAAAAKQAEKLRIDGNTYFKKDRFGAAIDAYTEAITLCPNVPVYWTNRALCHLKRNDWERVEEDSRRAIQLDSNSVKAHYMLGLTLLRKQESAKGIKELEKALDLGRGANPKGYMVEEIWQELAKAKYHEWERSSSKRSWELQSLKEACESALKEKHFLDVSEMEGFIDDATTSHLEQLEALERVFNKAAEADTPTEVPDYLCCRITLDIFHDPVITPCGLTYERAVILEHLEKVGKFDPITREPLDPSQLVPNLAIKEAVEAFLDKHGWAYKVD 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0641 278 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Ssu2g0641 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 277 IPR013083 -
Ssu2g0641 278 SUPERFAMILY RING/U-box 195 275 - -
Ssu2g0641 278 PANTHER OS08G0113300 PROTEIN 5 277 - -
Ssu2g0641 278 SUPERFAMILY TPR-like 9 129 IPR011990 GO:0005515
Ssu2g0641 278 Pfam Tetratricopeptide repeat 80 108 IPR019734 GO:0005515
Ssu2g0641 278 Pfam Tetratricopeptide repeat 18 43 IPR019734 GO:0005515
Ssu2g0641 278 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 5 277 IPR045200 GO:0000209|GO:0061630
Ssu2g0641 278 SMART Ubox_2 204 267 IPR003613 GO:0004842|GO:0016567
Ssu2g0641 278 Gene3D Tetratricopeptide repeat domain 4 141 IPR011990 GO:0005515
Ssu2g0641 278 ProSiteProfiles U-box domain profile. 200 274 IPR003613 GO:0004842|GO:0016567
Ssu2g0641 278 SMART tpr_5 11 44 IPR019734 GO:0005515
Ssu2g0641 278 SMART tpr_5 79 112 IPR019734 GO:0005515
Ssu2g0641 278 SMART tpr_5 45 78 IPR019734 GO:0005515
Ssu2g0641 278 CDD RING-Ubox_CHIP 201 267 IPR045202 -
Ssu2g0641 278 Pfam U-box domain 201 273 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0641 Ssu-Chr2 36367443 36374163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0641 4 277 U-box Gene Family AT3G07370 70.073 1.54e-144 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0641 K09561 - gmx:100796519 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1482 3 38794830 38800902 Ssu2g0641 2 36367443 36374163 PCT