Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0615 ATGCTTGATTTTAAGCTTATAATCTTTGATAAATTTTGCCCGTTGTCATTTCtggttattttttgttacaGAAATGAAAACAATGTTGTGAAGGAAATTGTTGATGAAGTTTTGATAAGATTGGATAGAACATACTTGTTTACCACAGACTTCCCAGTCGGATTAGAATCTCGTGTGCAACATGGTGTTGGCTTTCTAAGAAAGCAAACAAGAGGAACTTGTATATTAGGGATTTGGGGAATGGGAGGGATTGGTAAAACAACCATAGCAAAAGCCatttacaataaaattcgtcatgaatttgaatataaaagttTCCTTGCTAATATTAGAGAGGTTTGGGAAAGAGATTGGGGCCAGATTTACTTACAAAAACAACTTCTTTCAGATATCCTTAAAACAGAAAAGATGGTGCTTAGCATTGATGGGGGAAAAGCTATGATCAAGGAAATACTTTGCACAAAAAAAGTACTTGTTGTACTTGATGATGTGAATAAATTTGAACAATTAAATGCACTATGCGGAAATCATAATGGGATTGGTCAAGGAAGTGTGATAATCATTACAACTAGAGACGTACGTATACTCGATGTACTTGAAGTTGACTATGTACATAGAGTGGAGGAAATGAATGAAAGTGAGTTCCTTGAGCTTTTTAGTTGGCAAGCTTTTAGGGAAGCAAATCCAGCAAAAGACTTTCTTAAACTCTCTAAACAAGTAGTCACATACTGTGGAAGACTACCACTAGCTCTTGAAGTTCTTGGATCTCACTTGttcaagagaagaaaagaagagtgGCAAAGTGtattatcaaaactaaaaaaaatacccaaTGATAAAATAcaggagaaattaaaaataagctacGACGGTTTGACGGATCATATGGAGAGGGACATATTTCTTGACATATGCTGCTTCTTTATTGGCAAGGATAGAGCCTATGTCACAGAGGTACTAAATGGTTGTGAACTTCATGCTGAAATTGGAATAACAGTCCTAGTAGAAAGGAGCCtcattaaagttgaaaaaaataacaaactcgGAATTCATGATTTGTTACGTGACATGGGAAGAGAAATTGTTCGTCAAAGTTCACCACTAGAACCACAGAAGCGCAATCGATTGTGGGTCCATGATGATGTACTTGATATATTGACAAAACATACGGTAAGAACTTTCTCTTACTATTTTCGAACTTTCAATCATCCTTGA 1215 0.3218 MLDFKLIIFDKFCPLSFLVIFCYRNENNVVKEIVDEVLIRLDRTYLFTTDFPVGLESRVQHGVGFLRKQTRGTCILGIWGMGGIGKTTIAKAIYNKIRHEFEYKSFLANIREVWERDWGQIYLQKQLLSDILKTEKMVLSIDGGKAMIKEILCTKKVLVVLDDVNKFEQLNALCGNHNGIGQGSVIIITTRDVRILDVLEVDYVHRVEEMNESEFLELFSWQAFREANPAKDFLKLSKQVVTYCGRLPLALEVLGSHLFKRRKEEWQSVLSKLKKIPNDKIQEKLKISYDGLTDHMERDIFLDICCFFIGKDRAYVTEVLNGCELHAEIGITVLVERSLIKVEKNNKLGIHDLLRDMGREIVRQSSPLEPQKRNRLWVHDDVLDILTKHTVRTFSYYFRTFNHP 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0615 404 Gene3D - 48 205 IPR027417 -
Ssu2g0615 404 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 30 389 IPR044974 GO:0006952
Ssu2g0615 404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 304 IPR027417 -
Ssu2g0615 404 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 30 389 - -
Ssu2g0615 404 Pfam NB-ARC domain 65 292 IPR002182 GO:0043531
Ssu2g0615 404 PRINTS Disease resistance protein signature 244 258 - -
Ssu2g0615 404 PRINTS Disease resistance protein signature 75 90 - -
Ssu2g0615 404 PRINTS Disease resistance protein signature 151 165 - -
Ssu2g0615 404 Gene3D - 209 293 IPR042197 -
Ssu2g0615 404 SUPERFAMILY "Winged helix" DNA-binding domain 279 386 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0615 Ssu-Chr2 35241073 35242287 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0615 53 377 WRKY Transcription Factor Family AT5G45050 33.436 9.83e-52 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0615 - - vra:106773318 605.52