Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0611 ATGGAAAACCAGTTCTTTCTGAATGGTGGGGTGTCACAAACACAACACTCCCTTCACTTTGAACCTTCAAATCCTTCAGTGCCCTCTTGGCAATCACTCTCACCAACCATGGGAATTCAACCAACTGTTCTGAATTGTGCCCCTGAGCAAACCCAAGATTGTTTTTACAACCCCAATTGGGACAAGTCAACAGATCATGGCCTTCACTTTGATTCCTCAGCACTGAGTTCAATGGTCTCATCTCCTGCAGCATCATCCAACCCCAATAATATGTCCAATAAGAATTTCATCATCAGGGAATTGGTGGGGAAATTGGGAGCTATTGGAAGCTCTGATGAGATCCCACAACACTCTCCTCACCCTTTGGTTGTGGCATCTTCTTACATGAACAATGGCACTAACAGCACCAACACTTCATGTTACACCACCCCTTTGAGTTCCCCTCCAAAGGTGAACGTTGTCCACAGTTTGGTGAATGAGAAGTTGGCAAATTTGGGAGGAAAGTCAATGGCTTTGAATTCCAGTGTGGCAGAATTCTCAGCTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGTTATCTTGCTTTGGCAGCAGGAGTTTCAATGGTAGGAGTGGCCAATTGGGGGTGAACAATGCTGAATTGGCTCAGAGATCTGCACCAGTTATGGAACATGGAAAGTTACCTAGAGTCTCAAGTAGTCCATTGCTGGAAACTGTTGGATCTCAAATGGGTGCCCAAGAGAGCAAGAATTCTGCATTTCAGGAGCAGGAAAAAATGGAAGTGGCCAATTCCCAAGAGGAATCTACAATTTCTGAGCAAACCCCAAATGGGGAAACTGGGGTGAAAACTTCCCAAGATATGATGAATTCcaggaaaagaaaaacttctTCCAAAGGAAAAGCCAAAGAAACTTCAAACTCTACTAATCCCACcaagGGTGTTGAAGCTAGTGAGGATTCAAATTCAAAGCGCAGCAAGCCAAATGAGCGTGAGAGAAATGAAAATGGGCCCGTAAAGGTTGAGGAAGAGTCCAAAGCAGTGGAAGAGAAACAGAACAAAAGTAACTCAAAACCTCCTGAGCCTCCAAAAGATTACATTCATGTAAGGGCAAGAAGAGGCCAAGCCACTGACAGCCATAGTCTTGCAGAACGTGTACGGAGGGAGAAAATCAGTGAGAGGATGAAGCTGCTCCAAGATCTTGTACCAGGCTGCAATAAGGTTACTGGCAAGGCACTTATGCtagatgaaattataaattatgttcagtCATTGCAGCGTCAAGTCGAGTTCCTGTCTATGAAGTTGGCTTCTGTTAACACAAGGATGGATCATAGTACTGAGAGTCTTATTTCAAAAGATgtatttcaatcaaataattctTTGGCAACACACCCAAATCCAATATTCCCATTAGATTCCTCAGCACAAGCCTTTTATGGGCACCAGCCTCAGCAAAACCCAGTTATCCATAATAACATACCTAACAGAACGGTGACCCACTGCTCAGTGGACCCATTAGATACTTTGTGCCAAAATCTTGGCATGCAGTTACCTCCCCTAAATGGGTTTAATGAAGGTGGCTCTCAGTATCCATTAACATTCTGTGAGGATGACCTCCACACCATTGTTCAGATGGGGTTTGGCCAAACTCCTAACAGGGAAACACCAATGCAATCCCCGAGTTTCAACGGTAATAAAGCAGAAAAGTCACGCATTATTGACACGTTAatgaaatatcattttcattag 1749 0.4254 MENQFFLNGGVSQTQHSLHFEPSNPSVPSWQSLSPTMGIQPTVLNCAPEQTQDCFYNPNWDKSTDHGLHFDSSALSSMVSSPAASSNPNNMSNKNFIIRELVGKLGAIGSSDEIPQHSPHPLVVASSYMNNGTNSTNTSCYTTPLSSPPKVNVVHSLVNEKLANLGGKSMALNSSVAEFSADPGFAERAAKLSCFGSRSFNGRSGQLGVNNAELAQRSAPVMEHGKLPRVSSSPLLETVGSQMGAQESKNSAFQEQEKMEVANSQEESTISEQTPNGETGVKTSQDMMNSRKRKTSSKGKAKETSNSTNPTKGVEASEDSNSKRSKPNERERNENGPVKVEEESKAVEEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDHSTESLISKDVFQSNNSLATHPNPIFPLDSSAQAFYGHQPQQNPVIHNNIPNRTVTHCSVDPLDTLCQNLGMQLPPLNGFNEGGSQYPLTFCEDDLHTIVQMGFGQTPNRETPMQSPSFNGNKAEKSRIIDTLMKYHFH 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0611 582 MobiDBLite consensus disorder prediction 317 365 - -
Ssu2g0611 582 Pfam Helix-loop-helix DNA-binding domain 378 425 IPR011598 GO:0046983
Ssu2g0611 582 MobiDBLite consensus disorder prediction 238 286 - -
Ssu2g0611 582 MobiDBLite consensus disorder prediction 238 365 - -
Ssu2g0611 582 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 372 444 IPR036638 GO:0046983
Ssu2g0611 582 CDD bHLH_AtBPE_like 364 449 - -
Ssu2g0611 582 Coils Coil 421 441 - -
Ssu2g0611 582 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 568 IPR024097 GO:0006355
Ssu2g0611 582 MobiDBLite consensus disorder prediction 301 316 - -
Ssu2g0611 582 Gene3D - 371 448 IPR036638 GO:0046983
Ssu2g0611 582 PANTHER BHLH TRANSCRIPTION FACTOR 2 568 - -
Ssu2g0611 582 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 374 424 IPR011598 GO:0046983
Ssu2g0611 582 SMART finulus 380 430 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0611 Ssu-Chr2 35078737 35081454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0611 1 529 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 41.869 2.36e-101 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu2g0611 HLH 4.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0611 - - gmx:100801233 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1475 3 38537201 38539576 Ssu2g0611 2 35078737 35081454 PCT