Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0605 ATGGACGAGGACTTCGACGTGCCGGCGGCGGAGCCCATGAACGAGGACTTCGACTTCGCTGGCGGCGACCTCGACAACCCCGTCCTCAAGGTCGGCGAGGAGAAGGAGATTGGGAAACAGGGCCTGAAGAAGAAGCTTCTCAAGGAAGGTGAGGGATGGGACACGCCTGAAGTTGGTGATGAAGTTCAAGttcaCTATACTGGGACTTTGCTTGATGGCACTAAATTTGATTCCAGCAGAGATAGGGGAACTCCGTTCAGTTTTACACTTGGACAAGGGCAAGTTATTAAAGGATGGGATCAGGGTATTATAACGATGAAGAAAGGGGAAAATGCTCTTTTCACTGTCCCGGCTGAGCTAGCTTATGGTGAATCTGGTTCTCCTCCAACAATTCCTCCCAATGCGATTCTTCAATTTGATGTGGAGCTGCTGTCCTGGACTAGTGTGAAGGACATATGTAAAGATGGAGGTTTATTTAAGAAGATACTTACTGAGGGGGACAAATGGGAGAACCCCAAGGATCCTGATGAAGTTTTAGTGAAGTATGAAGCACGTCTTGAAGATGGAACTCTTGTGGCAAAATCTGATGGAGTGGAGTTCACAGTCAAAGATGGTCATTTTTGTCCTGCTTTGTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGATTCTGACAGTGAAGCCACAATaTGGATTTGGTGAGAAGGGTAAGCCAGCACATGGGGACGAAGGTGCAGTTCCACCTAATGCAACATTGCAGATTACTCTCGAGTTAGTTTCTTGGAAGACTGTGTCAGAAGTAACTGATGACAAGAAGGTCATTAAGAAGATCCTCAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGAGCTGTTGTGAAATTGAAAGTAATTGGTAAACTGCAAGATGGTACCTTGTTTTTCAAAAAGGGTCATGATGATGAAGGGGACCTGTTTGAATTCAAAACAGATGAGGAACAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTGAGATAGCATTGTTGACTATTGCACCTGAATATGCTTTCGGTTCATCAGAGTCTCAGCAGGAACTGGCAGTGGTTCCACCTAACTCCACTTTGTATTACGAGGTTGAGCTAGTATCGTTTGTGAAGGAAAAGGAGTCCTGGGATATGAACACACAAGAGAAGATAGAGGCTGCTggtaagaagaaagaagaagggaATGCATTATTTAAAGCTGGTAAATATGCAAGGGCTTCTAAAAGATATGAGAAGGCTGTAAAGTTCATAGAGTATGACACCAACTTCAGTGAAGAGGAGAAGAAGAGCTCCAAGACCTTGAAGGTTGCCTGTAATCTAAACAATGCAGCATGCAAGCTGAAGTTAAAAGATTACAAACAAGCGGAGAAATTGTGCACAAAGGTACTGGATCTGGAGAGTACTAATGTGAAGGCTCTCTATAGGAGGGCCCAGGCATATATCCAGTTGGCTGATTTAGATTTGGCTGAATTCGATGTTAAGAAAGCTCTTGAGATTGACCCTGACAACAGGGATGTCAAGCTTGAGTACAGGACTTTGAAGGAAAAGATGAAGGAGTATAACAAAAAAGAGGCAAAATTTTATGGAAATATGTTCAACAAACTACATAAGCTAGATTCTCTTGACAGTAATAAACCAGCGTCCAAGGACGCCCAACCCATGAATATCGACAGCAAGGCATAA 1728 0.4329 MDEDFDVPAAEPMNEDFDFAGGDLDNPVLKVGEEKEIGKQGLKKKLLKEGEGWDTPEVGDEVQVHYTGTLLDGTKFDSSRDRGTPFSFTLGQGQVIKGWDQGIITMKKGENALFTVPAELAYGESGSPPTIPPNAILQFDVELLSWTSVKDICKDGGLFKKILTEGDKWENPKDPDEVLVKYEARLEDGTLVAKSDGVEFTVKDGHFCPALSKAVKTMKKGEKVILTVKPQYGFGEKGKPAHGDEGAVPPNATLQITLELVSWKTVSEVTDDKKVIKKILKEGEGYERPNEGAVVKLKVIGKLQDGTLFFKKGHDDEGDLFEFKTDEEQVIDGLDRAVLTMKKGEIALLTIAPEYAFGSSESQQELAVVPPNSTLYYEVELVSFVKEKESWDMNTQEKIEAAGKKKEEGNALFKAGKYARASKRYEKAVKFIEYDTNFSEEEKKSSKTLKVACNLNNAACKLKLKDYKQAEKLCTKVLDLESTNVKALYRRAQAYIQLADLDLAEFDVKKALEIDPDNRDVKLEYRTLKEKMKEYNKKEAKFYGNMFNKLHKLDSLDSNKPASKDAQPMNIDSKA 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0605 575 Gene3D Tetratricopeptide repeat domain 388 545 IPR011990 GO:0005515
Ssu2g0605 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 292 385 IPR001179 GO:0003755
Ssu2g0605 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 175 264 IPR001179 GO:0003755
Ssu2g0605 575 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 273 384 - -
Ssu2g0605 575 SUPERFAMILY FKBP-like 33 151 - -
Ssu2g0605 575 SMART tpr_5 402 435 IPR019734 GO:0005515
Ssu2g0605 575 SMART tpr_5 485 518 IPR019734 GO:0005515
Ssu2g0605 575 SMART tpr_5 451 484 IPR019734 GO:0005515
Ssu2g0605 575 Gene3D - 32 150 IPR046357 GO:0003755
Ssu2g0605 575 SUPERFAMILY FKBP-like 151 266 - -
Ssu2g0605 575 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 384 555 - -
Ssu2g0605 575 PANTHER PEPTIDYLPROLYL ISOMERASE 1 271 - -
Ssu2g0605 575 Coils Coil 518 538 - -
Ssu2g0605 575 ProSiteProfiles TPR repeat profile. 485 518 IPR019734 GO:0005515
Ssu2g0605 575 PANTHER PEPTIDYLPROLYL ISOMERASE 273 384 - -
Ssu2g0605 575 SUPERFAMILY FKBP-like 268 402 - -
Ssu2g0605 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 286 382 IPR001179 GO:0003755
Ssu2g0605 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 170 261 IPR001179 GO:0003755
Ssu2g0605 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 55 144 IPR001179 GO:0003755
Ssu2g0605 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 59 147 IPR001179 GO:0003755
Ssu2g0605 575 Gene3D - 265 387 IPR046357 GO:0003755
Ssu2g0605 575 PANTHER PEPTIDYLPROLYL ISOMERASE 384 555 - -
Ssu2g0605 575 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 271 - -
Ssu2g0605 575 MobiDBLite consensus disorder prediction 554 575 - -
Ssu2g0605 575 MobiDBLite consensus disorder prediction 1 22 - -
Ssu2g0605 575 SUPERFAMILY TPR-like 390 550 IPR011990 GO:0005515
Ssu2g0605 575 Gene3D - 151 264 IPR046357 GO:0003755
Ssu2g0605 575 Pfam Tetratricopeptide repeat 485 518 IPR001440 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0605 Ssu-Chr2 34858519 34864018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0605 29 559 Calmodulin-binding Proteins AT3G25230 82.863 0.0 893
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0605 K09571 - gmx:100803189 1043.11