Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0601 ATGGACGCTGACGGGATTGATGAACTTAGGATACCTCTATTGCAGACTTCAGAAGACGGCGTCGTTAGGACGGTTACGTTCCAACTAAGTGACATCAAGTGTGCCTCATGCGTGAATTCCGTTGAGTCCGTCGTTAGGAACCTCGACGGCATCAAAAGCGTCGCCGTTTCGCCACTTGATGGCCGCGCCGCAATCAAGTTTGTCCCGAAGTTCGTTACCgtgaaacaaataaaagaaagcatAGAGGAGAGTGGGTTTGGAGTTGATGAGCTTCATGAGCAGGACATAGCAGTCTGCCGAGTGAGGATTAAAGGAATGGCATGCACAAGCTGCTCGGAGTCTGTTGAAAATGCCCTTCAAATGGTTGAAGGGGTGAAAAAGGCAATAGTTGGTCTTGCTTTGGAGGAGGCGAAAAGTGCACTTTGA 426 0.4742 MDADGIDELRIPLLQTSEDGVVRTVTFQLSDIKCASCVNSVESVVRNLDGIKSVAVSPLDGRAAIKFVPKFVTVKQIKESIEESGFGVDELHEQDIAVCRVRIKGMACTSCSESVENALQMVEGVKKAIVGLALEEAKSAL 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0601 141 Pfam Heavy-metal-associated domain 26 86 IPR006121 GO:0046872
Ssu2g0601 141 SUPERFAMILY HMA, heavy metal-associated domain 23 91 IPR036163 GO:0046872
Ssu2g0601 141 ProSiteProfiles Heavy-metal-associated domain profile. 98 141 IPR006121 GO:0046872
Ssu2g0601 141 Gene3D - 90 140 - -
Ssu2g0601 141 Gene3D - 19 89 - -
Ssu2g0601 141 CDD HMA 101 137 IPR006121 GO:0046872
Ssu2g0601 141 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 15 138 - -
Ssu2g0601 141 PANTHER ATP7, ISOFORM B 15 138 - -
Ssu2g0601 141 ProSitePatterns Heavy-metal-associated domain. 103 132 IPR017969 GO:0046872
Ssu2g0601 141 ProSitePatterns Heavy-metal-associated domain. 29 57 IPR017969 GO:0046872
Ssu2g0601 141 SUPERFAMILY HMA, heavy metal-associated domain 94 137 IPR036163 GO:0046872
Ssu2g0601 141 CDD HMA 26 88 IPR006121 GO:0046872
Ssu2g0601 141 ProSiteProfiles Heavy-metal-associated domain profile. 24 90 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0601 Ssu-Chr2 34664576 34665811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0601 18 138 Primary Pumps ATPases AT1G63440 43.200 1.46e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0601 K17686 - gmx:100793894 242.662