Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0600 ATGTCTTCTCTTGAGTTAGCTGTGGGGGTGAACCATGTTGAGATGGATTTGTCAGAACATAAAGTTACCGTTAGCTATGATCCGAATGTTACAGGTCCAAGGTCTCTCATTCACTGTGTTCAGGAAGCTAGCAGTGGCCCCAAGAGGTATCAAGCAACCGTGTACTCTCCTTCGGGACAAAGAGAAAGGGATAAGCTGCTATTTTCTGTTCCTGTGTTTGTATTTGCCATGGTGCTTCCCATGCTTCCTCCTTATGGCAACTGGTTAAACTACAAGATCCACAATATGCTTACTATTGGGTTGTTTTTAAGATGGATCCTTAGCACACCTGTGCAGTTCATAGTTGGCAAAAGGTTCTATGTGGGATCATATCATGCACTGAAGCGAAAATCTGCTAACATGGACGTGCTGGTTGCACTAGGCACAAATGCTGCTTATTTTTActctctatatattttaataaaagcacTGACTTCAGATACATTTCAAGGACAAGATTTCTTTGAGACAAGTTCCATGTTGATATCCTTTATTCTATTAGGGAAATATTTGGAAATTGTGGCTAAAGGGAAAACATCAGATGCTTTAGGAAAGCTGACTCAACTTGTTCCTgataaagcttatttagtagcAATTGATACCGATGGAAATATCATCACAGAGACAGAAATTGACACTcaacttatacaaaaaaatgacataattaaGATTGTTCCTGGGGCCAAAATTCCTGTTGATGGTATTGTTATAAAAGGGCAAAGCTATGCAAATGAAAGTATGATCACTGGGGAGGCAAGACCTGTTGATAAAAGCCCAGGAGACAAGGTTATCAGTGGAACCATCAATGAGAATGGCTGCTTACTGGTCAAGGCCATACATGTTGGATCAGACACTGCACTTTCTCAAATAGTTCAACTTGTTGAAGCTGCTCAACTGGCCAAAGCACCAGTTCAAAAACTTGCCGACCATATTTCAAGGGTTTTTGTTCCAATAGTGGTTGTTGCAGCCCTAATAACTTGGCTTGGTTGGTTCATTCCTGGGGAAGCTGGTATTTACCCTAAACATTGGATACCAAAAGCAATGGATGCATTTGAGCTTGCTTTGCAGTTTGCTATTTCTGTGCTGGTTGTTGCTTGCCCATGTGCTCTGGGTCTTGCAACACCTACTGCAGTCATGGTTGCTTCAGGCGTGGGTGCTTCTCTGGGCGTGCTCATCAAGGGTGGAGATGCACTTGAAAAGGCACACAAGGTAAAAATTGTTGTGTTTGATAAGACTGGGACACTAACAGTTGGGAAGCCAGTGGTAGTTAGTGCAGTGCTGTTTTCTGAATTTTCTATGGAAGAATTATGTGACACGACAATTTCTGTGGaggCAAGTAGCGAGCACCCGTTAGCAAAAGCTGTTGTGGCACATGCAAAGAGGCTGCGCCAGAAATTTGGTTCTTGCCCTGAGGAAGTCCCAGATGTGGATGATTTTGAAGTACACATGGGAGCTGGTGTAAGTGGAAAAGTTGGTGATAGAACGGTTGTAGTTGGAAACAGGAGACTCATGCATGCTTGTAATATTCCAATATGTTCTGAGGTTGAGAAGTACATTTCTGAAAATGAAATTCTGGCTAGAACATGTGTTTTAGTTTCAATAGATGGAAAGATTGCTGGTGCATTCTCTGTAACCGATCCTGTAAAACCAGAGGCTAAACGTGTCATTTCTTTTCTCCACTCCATGGGCATCTCAAGCATCATAGTGACTGGGGATAACTGTGCTACTGCAACAGCTATTGCAAATGAAGTGGGTATTGATGAGGTCTTTGCTGAGACAGATCCAGTAGGCAAAGCTAATAAAGTGAAAGACTTGCAGATGAAAGGAATGACTGTGGCGATGGTAGGTGATGGAATAAACGACTCGCCAGCCTTGGTTGCTGCTGATGTTGGCATGGCAATTGGTGCTGGAACTGACATAGCTATAGAAGCAGCTGATATTGTTCTGGTCAAAAGCAGTTTGGAAGATGTGATTACAGCCGTAGATCTATCTAGAAAGACCATGTCACGCATCCGGCTGAACTACATCTGGGCTCTTGGTTACAACATTCTAGGCATGCCAATTGCTGCTGGAGTCTTGTACCCCTTTGTTGGAATCAGATTGCCCCCATGGCTTGCTGGTGCTTGCATGGCTGCTTCTTCTATTAGTGTGGTTTCTTCATCTCTTTTGCTGCAATTCTATAAAAAACCTCTGCTTATAGAATCCTCTTGA 2250 0.4178 MSSLELAVGVNHVEMDLSEHKVTVSYDPNVTGPRSLIHCVQEASSGPKRYQATVYSPSGQRERDKLLFSVPVFVFAMVLPMLPPYGNWLNYKIHNMLTIGLFLRWILSTPVQFIVGKRFYVGSYHALKRKSANMDVLVALGTNAAYFYSLYILIKALTSDTFQGQDFFETSSMLISFILLGKYLEIVAKGKTSDALGKLTQLVPDKAYLVAIDTDGNIITETEIDTQLIQKNDIIKIVPGAKIPVDGIVIKGQSYANESMITGEARPVDKSPGDKVISGTINENGCLLVKAIHVGSDTALSQIVQLVEAAQLAKAPVQKLADHISRVFVPIVVVAALITWLGWFIPGEAGIYPKHWIPKAMDAFELALQFAISVLVVACPCALGLATPTAVMVASGVGASLGVLIKGGDALEKAHKVKIVVFDKTGTLTVGKPVVVSAVLFSEFSMEELCDTTISVEASSEHPLAKAVVAHAKRLRQKFGSCPEEVPDVDDFEVHMGAGVSGKVGDRTVVVGNRRLMHACNIPICSEVEKYISENEILARTCVLVSIDGKIAGAFSVTDPVKPEAKRVISFLHSMGISSIIVTGDNCATATAIANEVGIDEVFAETDPVGKANKVKDLQMKGMTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLVKSSLEDVITAVDLSRKTMSRIRLNYIWALGYNILGMPIAAGVLYPFVGIRLPPWLAGACMAASSISVVSSSLLLQFYKKPLLIESS 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0600 749 Gene3D - 428 505 IPR023299 GO:0000166
Ssu2g0600 749 Gene3D - 506 559 IPR023299 GO:0000166
Ssu2g0600 749 ProSitePatterns E1-E2 ATPases phosphorylation site. 423 429 IPR018303 -
Ssu2g0600 749 Gene3D - 388 685 IPR023214 -
Ssu2g0600 749 SFLD p-type atpase 403 680 IPR044492 -
Ssu2g0600 749 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 134 737 IPR027256 GO:0006812|GO:0016021|GO:0019829
Ssu2g0600 749 Pfam haloacid dehalogenase-like hydrolase 417 642 - -
Ssu2g0600 749 PRINTS P-type cation-transporting ATPase superfamily signature 553 564 - -
Ssu2g0600 749 PRINTS P-type cation-transporting ATPase superfamily signature 575 585 - -
Ssu2g0600 749 PRINTS P-type cation-transporting ATPase superfamily signature 421 435 - -
Ssu2g0600 749 PRINTS P-type cation-transporting ATPase superfamily signature 257 271 - -
Ssu2g0600 749 PRINTS P-type cation-transporting ATPase superfamily signature 628 647 - -
Ssu2g0600 749 PRINTS P-type cation-transporting ATPase superfamily signature 651 663 - -
Ssu2g0600 749 CDD P-type_ATPase_Cu-like 66 724 - -
Ssu2g0600 749 SUPERFAMILY Calcium ATPase, transduction domain A 221 307 IPR008250 -
Ssu2g0600 749 PANTHER ATP7, ISOFORM B 2 746 - -
Ssu2g0600 749 SUPERFAMILY HAD-like 419 734 IPR036412 -
Ssu2g0600 749 Gene3D - 189 311 - -
Ssu2g0600 749 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 2 746 - -
Ssu2g0600 749 Pfam E1-E2 ATPase 206 397 - -
Ssu2g0600 749 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 174 705 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu2g0600 749 PRINTS Copper-transporting ATPase signature 119 138 - -
Ssu2g0600 749 PRINTS Copper-transporting ATPase signature 605 622 - -
Ssu2g0600 749 PRINTS Copper-transporting ATPase signature 330 344 - -
Ssu2g0600 749 PRINTS Copper-transporting ATPase signature 171 190 - -
Ssu2g0600 749 PRINTS Copper-transporting ATPase signature 701 715 - -
Ssu2g0600 749 SUPERFAMILY Calcium ATPase, transmembrane domain M 166 414 IPR023298 -
Ssu2g0600 749 SFLD C1.7: P-type atpase like 403 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0600 Ssu-Chr2 34658884 34664430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0600 3 743 Primary Pumps ATPases AT1G63440 59.605 0.0 888
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0600 K17686 - gmx:100793894 1372.84