LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g0596	ATGGAAAGatataaaattttgagagagcTTGGGGATGGTTCTTGCGGTCATGTATATAAAGCCCGTGATATGAGAACTTATGAGATTGTTGCTGTCAAAAGGttgaaaagaaagttttgttTCTGGGAAGAATACACAAATTTACGAGAAGTTAAGGCCCTCCGTAAAATGAATCACCCAAATATCATAAAGTTGAAAGAGGTTgttagagaaaataatgaactatttttcatttttgaatacATGGATTGTAAtctttatcaattaataaaggAGAGAGAAATGCCCTTTTCAGAGGAAGAGATACGGTGCTTTATGAGGCAAGTGCTACAAGGACTCAGTCACATGCACAAGAAAGGATTCTTTCATCGGGATTTAAAACCTGAGAATTTGCTGGTAACAAATGATGTTCTGAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCAATGCCTCCATATACTCAATATGTTTCCACACGGTGGTATCGAGCTCCAGAAGTTTTGTTGCGATCCCCTTGTTATACTCCTGCTGTTGACATGTGGGCAGTTGGTGCTATATTAGCTGAGCTTTTTACTTTGACCCCCTTATTTCCTGGTGAAAGTGAAATAGATCAACTGTACAAAATATACCGCATTCTTGGTATGCCAGATTCCACTGCTTTCACCATAGGGGCCAACAACTCTCAGCTATTGGACCTAGTTGCTCATGAAGTTGTCCCACCTGTGAagctttctaatattattccaAATGCTAGTTTGGAAGCTATAGACTTGATCACACAACTGTTACATTGGGACCCATCAAGAAGGCCAGATGCAGATCAATCATTGCAACATCCATTTTTCCATGTGGATGCATGGGTTCCTTGTCCACTCAGTGATCCACTTGAGCTGAAGCTGAGTAGCAAGAGGTCAAAGCCAAATCTTGAGCTGAAACTGCAGGATTTTGGCCCTGATACCGATGATTGTTTTCTTGGCTTGACTTTAGCTGTAAAGCCCAGTATTTCAAACTTAGATGTGGTCCAAAATGTATCTCAGGGTGTCGGAGAGAATGTGCTATTTTGCTCAGATTTTAATGATCATTCAGACCAGTCAGTATTTTGGACAGTATTATCTCCTGATCAAAATGGTGTTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAGTTCAGTACAACATCCGCCAATTGGAGTTCCACAGTCAGCGGGATTTTCTTTTCAGCCTTTGCAGCCTAACATCTTAACTACACCATTTTTGGCTCTGTCTTCTCCGTTCCAGCGCGGGCACTGCCTCTGA	1308	0.3853	MERYKILRELGDGSCGHVYKARDMRTYEIVAVKRLKRKFCFWEEYTNLREVKALRKMNHPNIIKLKEVVRENNELFFIFEYMDCNLYQLIKEREMPFSEEEIRCFMRQVLQGLSHMHKKGFFHRDLKPENLLVTNDVLKIADFGLAREVSSMPPYTQYVSTRWYRAPEVLLRSPCYTPAVDMWAVGAILAELFTLTPLFPGESEIDQLYKIYRILGMPDSTAFTIGANNSQLLDLVAHEVVPPVKLSNIIPNASLEAIDLITQLLHWDPSRRPDADQSLQHPFFHVDAWVPCPLSDPLELKLSSKRSKPNLELKLQDFGPDTDDCFLGLTLAVKPSISNLDVVQNVSQGVGENVLFCSDFNDHSDQSVFWTVLSPDQNGVHNSAETSLSLSFSSVQHPPIGVPQSAGFSFQPLQPNILTTPFLALSSPFQRGHCL	435

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ssu2g0596	435	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE	1	314	-	-
Ssu2g0596	435	Pfam	Protein kinase domain	4	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Ssu2g0596	435	CDD	STKc_MAK_like	4	284	-	-
Ssu2g0596	435	SMART	serkin_6	4	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Ssu2g0596	435	SUPERFAMILY	Protein kinase-like (PK-like)	1	285	IPR011009	-
Ssu2g0596	435	ProSiteProfiles	Protein kinase domain profile.	4	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Ssu2g0596	435	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	121	133	IPR008271	GO:0004672\|GO:0006468
Ssu2g0596	435	Gene3D	Transferase(Phosphotransferase) domain 1	83	288	-	-
Ssu2g0596	435	PANTHER	CYCLIN-DEPENDENT KINASE F-4	1	314	-	-
Ssu2g0596	435	Gene3D	Phosphorylase Kinase; domain 1	1	82	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g0596	Ssu-Chr2	34552631	34563698	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g0596	1	284	Core Cell Cycle Gene Families	AT3G48750	38.644	1.27e-63	205

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_RCK	Ssu2g0596		Pkinase	4.1e-76	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g0596	K08829		K08830	gmx:100792842	847.04

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