Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0596 ATGGAAAGatataaaattttgagagagcTTGGGGATGGTTCTTGCGGTCATGTATATAAAGCCCGTGATATGAGAACTTATGAGATTGTTGCTGTCAAAAGGttgaaaagaaagttttgttTCTGGGAAGAATACACAAATTTACGAGAAGTTAAGGCCCTCCGTAAAATGAATCACCCAAATATCATAAAGTTGAAAGAGGTTgttagagaaaataatgaactatttttcatttttgaatacATGGATTGTAAtctttatcaattaataaaggAGAGAGAAATGCCCTTTTCAGAGGAAGAGATACGGTGCTTTATGAGGCAAGTGCTACAAGGACTCAGTCACATGCACAAGAAAGGATTCTTTCATCGGGATTTAAAACCTGAGAATTTGCTGGTAACAAATGATGTTCTGAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCAATGCCTCCATATACTCAATATGTTTCCACACGGTGGTATCGAGCTCCAGAAGTTTTGTTGCGATCCCCTTGTTATACTCCTGCTGTTGACATGTGGGCAGTTGGTGCTATATTAGCTGAGCTTTTTACTTTGACCCCCTTATTTCCTGGTGAAAGTGAAATAGATCAACTGTACAAAATATACCGCATTCTTGGTATGCCAGATTCCACTGCTTTCACCATAGGGGCCAACAACTCTCAGCTATTGGACCTAGTTGCTCATGAAGTTGTCCCACCTGTGAagctttctaatattattccaAATGCTAGTTTGGAAGCTATAGACTTGATCACACAACTGTTACATTGGGACCCATCAAGAAGGCCAGATGCAGATCAATCATTGCAACATCCATTTTTCCATGTGGATGCATGGGTTCCTTGTCCACTCAGTGATCCACTTGAGCTGAAGCTGAGTAGCAAGAGGTCAAAGCCAAATCTTGAGCTGAAACTGCAGGATTTTGGCCCTGATACCGATGATTGTTTTCTTGGCTTGACTTTAGCTGTAAAGCCCAGTATTTCAAACTTAGATGTGGTCCAAAATGTATCTCAGGGTGTCGGAGAGAATGTGCTATTTTGCTCAGATTTTAATGATCATTCAGACCAGTCAGTATTTTGGACAGTATTATCTCCTGATCAAAATGGTGTTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAGTTCAGTACAACATCCGCCAATTGGAGTTCCACAGTCAGCGGGATTTTCTTTTCAGCCTTTGCAGCCTAACATCTTAACTACACCATTTTTGGCTCTGTCTTCTCCGTTCCAGCGCGGGCACTGCCTCTGA 1308 0.3853 MERYKILRELGDGSCGHVYKARDMRTYEIVAVKRLKRKFCFWEEYTNLREVKALRKMNHPNIIKLKEVVRENNELFFIFEYMDCNLYQLIKEREMPFSEEEIRCFMRQVLQGLSHMHKKGFFHRDLKPENLLVTNDVLKIADFGLAREVSSMPPYTQYVSTRWYRAPEVLLRSPCYTPAVDMWAVGAILAELFTLTPLFPGESEIDQLYKIYRILGMPDSTAFTIGANNSQLLDLVAHEVVPPVKLSNIIPNASLEAIDLITQLLHWDPSRRPDADQSLQHPFFHVDAWVPCPLSDPLELKLSSKRSKPNLELKLQDFGPDTDDCFLGLTLAVKPSISNLDVVQNVSQGVGENVLFCSDFNDHSDQSVFWTVLSPDQNGVHNSAETSLSLSFSSVQHPPIGVPQSAGFSFQPLQPNILTTPFLALSSPFQRGHCL 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0596 435 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 314 - -
Ssu2g0596 435 Pfam Protein kinase domain 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0596 435 CDD STKc_MAK_like 4 284 - -
Ssu2g0596 435 SMART serkin_6 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0596 435 SUPERFAMILY Protein kinase-like (PK-like) 1 285 IPR011009 -
Ssu2g0596 435 ProSiteProfiles Protein kinase domain profile. 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0596 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Ssu2g0596 435 Gene3D Transferase(Phosphotransferase) domain 1 83 288 - -
Ssu2g0596 435 PANTHER CYCLIN-DEPENDENT KINASE F-4 1 314 - -
Ssu2g0596 435 Gene3D Phosphorylase Kinase; domain 1 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0596 Ssu-Chr2 34552631 34563698 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0596 1 284 Core Cell Cycle Gene Families AT3G48750 38.644 1.27e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Ssu2g0596 Pkinase 4.1e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0596 K08829 K08830 gmx:100792842 847.04