Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu2g0556 | atggcTGTCCCAAAAGTGAACGAAAAGTTTCTTGAAGACCTTGAAGTAATGGGATTTCCAATGGCACGGGCAACCAGAGCACTTCATTATTCTGGCAATACCAGCTTAGAGGATGCTATAAATTGGATGATTGATCATGAGAATGACATTGATATTGATGAGATGCCGTTGGTAGATGTAGATATTGAAGTAGAGTCCTCCGAATCATTTCCTATCACAGAAGAAATGAGAATCAAAGCACAGAGTTTAAGGGTACAAGAGCGGAAGacgaaagaggaggaagaaaaaagattggagagagaaagggaaaagGAGAGGATTCAAGCGGGTAAGAGACTCCTTGAGGCAAAGCGAATTgctgaagaaaatgaaagaaaacgAAGTTTATCCTTGAGAAAagcagaaaaagaagaagagaaaagagctAGAGAAAAAGTTCTCCAGAAACTAGAGCAGGATAAGTTAAATAGAAGGTATAAACAGGGATTGTCTTTAGAAGTCCGAGCAACTGTGAGATCATCTGCTATTGAAATACAACAAGAAAAGAAGTCAAAGCCTGTTTATACAACTGCAAAAGTTGAGCAGTTACGAGAATGTCTAAGGAATCTTAGGCGTAACCATCAGGGTGAGGATGCAAGAGTCAGAAGGGCCTTTCAAACACTTACAGTCTATGTTGGAAATGTTGCCAAGAATCCCAGGGAGGAAAAGTACAGGAAAATTCGAGTGAATAACCCATTATTCCAGGATAGAGTTGGAAGTTTAAATGGAGGTGTAGAGTTCCTTGAGCTCTGTGGCTTTGAGAGAACGGGTGACTTCTTGTATCTTCCTCATGAAAAGGTTGACATGGCACTGCTAAATTCAGCTGGTTCTGCCTTAAATTCTGCAATGACAAACCCTTTCTTTGGAGTTTTAAGTACTACTCGCAATTAA | 930 | 0.3591 | MAVPKVNEKFLEDLEVMGFPMARATRALHYSGNTSLEDAINWMIDHENDIDIDEMPLVDVDIEVESSESFPITEEMRIKAQSLRVQERKTKEEEEKRLEREREKERIQAGKRLLEAKRIAEENERKRSLSLRKAEKEEEKRAREKVLQKLEQDKLNRRYKQGLSLEVRATVRSSAIEIQQEKKSKPVYTTAKVEQLRECLRNLRRNHQGEDARVRRAFQTLTVYVGNVAKNPREEKYRKIRVNNPLFQDRVGSLNGGVEFLELCGFERTGDFLYLPHEKVDMALLNSAGSALNSAMTNPFFGVLSTTRN | 309 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu2g0556 | 309 | SMART | PGNneu | 216 | 277 | - | - | |
| Ssu2g0556 | 309 | CDD | PUB_UBA_plant | 200 | 304 | - | - | |
| Ssu2g0556 | 309 | PANTHER | F13M7.16 PROTEIN | 1 | 306 | - | - | |
| Ssu2g0556 | 309 | SUPERFAMILY | PUG domain-like | 193 | 300 | IPR036339 | - | |
| Ssu2g0556 | 309 | PANTHER | PUB DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 306 | - | - | |
| Ssu2g0556 | 309 | CDD | UBA_PUB_plant | 6 | 53 | - | - | |
| Ssu2g0556 | 309 | Gene3D | - | 198 | 295 | - | - | |
| Ssu2g0556 | 309 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 5 | 46 | IPR015940 | - | |
| Ssu2g0556 | 309 | Pfam | UBA/TS-N domain | 8 | 42 | IPR015940 | - | |
| Ssu2g0556 | 309 | Coils | Coil | 119 | 156 | - | - | |
| Ssu2g0556 | 309 | Pfam | PUB domain | 213 | 281 | IPR018997 | - | |
| Ssu2g0556 | 309 | Gene3D | - | 8 | 53 | - | - | |
| Ssu2g0556 | 309 | Coils | Coil | 193 | 213 | - | - | |
| Ssu2g0556 | 309 | SUPERFAMILY | UBA-like | 5 | 57 | IPR009060 | GO:0005515 | |
| Ssu2g0556 | 309 | Coils | Coil | 84 | 108 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu2g0556 | Ssu-Chr2 | 32322784 | 32331367 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu2g0556 | 1 | 304 | C2H2 Transcription Factor Family | AT1G04850 | 60.714 | 4.25e-103 | 303 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu2g0556 | K24348 | - | gmx:100781260 | 510.375 |