Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0552 ATGGAAGGTCGCCGGAGGGTAACGCTTTACGATCAAATGACAGCTGGCAACAGCAGCAGCAGCCGAGACTCACTAGCCCGCCTCATGCTCGACGACATCGTTTTTAAGAAGACCGAAGCGGAAGCCGATGGGAGCCGCAAGCTGAGCCGAAGCCGGACTCTCCAAGACATCATTCGCGAAGAAGAACCTAACAACAACGTGAAGGATCGCAACTCTTGGAAAGCCTTTAAGGAAAAGCTTCGGCTCAAGCGCGCTATCGGCTCTGCTTGGTCCTCCACCGCTAATCAcactcataataataacaatgatgatgatgatgataggaATTTACCTCAAACTCGCCATGACTCGGACGCGTCGACTCAGCAGAACGACGTCGTCGCGGAAGACGCCAACGAGTCGGATCCGATTGCGCGATTCGGGTCTCCGGTGGACAACGCGGCGGCCGGCGGCGACTCCTCCGACGGGGAGAACAACCACGAGGCGGCGGTTGGCGTGTCGTTGATGGATTTGTTGGAGGAAACGGAGCAGGAAATGGATTTCTATAGAGTGAGCGATGAAGACGGTGATGATGACGTGGCAGAAtatgagaagagagaagaagaaggagatgaTGAAGAAAAAGAGGGTGTGGAGGAAGTGGGGGGTTTGGTGGAGTATAACTGCTGCGTGTGCATGGTGCGGCATAAAGGTGCGGCGTTTATCCCGTGCGGACACACGTTCTGCAGAATGTGTTCTAGGGAGATTTGGGTGAGCAGAGGGAACTGCCCTCTctgcaataatttaattttggaaattctTGATATTTTCTGA 813 0.4895 MEGRRRVTLYDQMTAGNSSSSRDSLARLMLDDIVFKKTEAEADGSRKLSRSRTLQDIIREEEPNNNVKDRNSWKAFKEKLRLKRAIGSAWSSTANHTHNNNNDDDDDRNLPQTRHDSDASTQQNDVVAEDANESDPIARFGSPVDNAAAGGDSSDGENNHEAAVGVSLMDLLEETEQEMDFYRVSDEDGDDDVAEYEKREEEGDDEEKEGVEEVGGLVEYNCCVCMVRHKGAAFIPCGHTFCRMCSREIWVSRGNCPLCNNLILEILDIF 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0552 270 PANTHER OS01G0917900 PROTEIN 100 270 - -
Ssu2g0552 270 MobiDBLite consensus disorder prediction 185 211 - -
Ssu2g0552 270 PANTHER OS01G0917900 PROTEIN 2 120 - -
Ssu2g0552 270 ProSiteProfiles Zinc finger RING-type profile. 222 260 IPR001841 -
Ssu2g0552 270 SUPERFAMILY RING/U-box 221 266 - -
Ssu2g0552 270 MobiDBLite consensus disorder prediction 1 23 - -
Ssu2g0552 270 MobiDBLite consensus disorder prediction 115 129 - -
Ssu2g0552 270 PANTHER OS01G0917900 PROTEIN 100 270 - -
Ssu2g0552 270 Pfam Zinc finger, C3HC4 type (RING finger) 220 263 - -
Ssu2g0552 270 CDD RING-HC 222 259 - -
Ssu2g0552 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 270 IPR013083 -
Ssu2g0552 270 PANTHER OS01G0917900 PROTEIN 2 120 - -
Ssu2g0552 270 SMART ring_2 222 259 IPR001841 -
Ssu2g0552 270 MobiDBLite consensus disorder prediction 99 114 - -
Ssu2g0552 270 MobiDBLite consensus disorder prediction 91 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0552 Ssu-Chr2 31995071 31995883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0552 4 270 C3H Transcription Factor Family AT3G25030 36.630 2.00e-46 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0552 - - gmx:100819018 382.104