Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0548 ATGGGTTTTCTAACTCACATTAAttacttgttgatttttttgCTCATATTTTCCGGCTTCTATTTGGGTGTAAGCTCTGTGAATGATACTATCACATCAACCAGATCCATCAGGGACCCTGAGACAATAAGCTCAAACAGCGGTGACTTCAAGCTAGGCTTCTTCAGTCCTGAAAAATCCACACATCGCTATGTAGCAATCTGGTATCTCTCTGAATCCTACATCATATGGATAGCCAATAGAGACCAACCACTTAATGATTCATCTGGGGTGTTCAAAACTGACAAGGATGGGAATCTTGTGGTATTGGATGCACAAAATAGTGTCATATGGTCAACAAATGTGTCAATTAGTGCTACCAATACAACTGCTCAACTTGATGATTTAGGAAATCTGATCCTGCTTGATGACACAAGTGGAACAGTAATATGGGACAGTTTCACACACCCTGCTGATGCTGCAGTGCCAGGGATGAAGATTGCTGCCAACAGGGTCACAGGTAAGAAAATTGCGTATGTGTCATGGAAAAGCAGTTCTGATCCTTCTTCTGGGTACTTCACTGGGAGCCTTGAACGGCTGGATGCTCCAGAAGTGTTTTTTTGGTACAACAAAACAAAGCCATATTGGAGAACTGGTCCATGGAATGGAAGGGTCTTCCTTGGGTCGCCAAGGATGTTAACTGAGTACCTATATGGATGGCGTTTTGAGCCTAATGATAATGGAACTGCTTATCTAACCTACAATTTTGCAAACCCTTCTATGTTTGGAATCCTGACCATAACTCCACACGGCACACTTAAATTGGTAGAGTTTATGAACAAAAAGGAACTTCTAGCACTTGAGGTGGATCAAAATGAATGTGACTTTTATGGGAAGTGTGGACCTTTTGGAAGCTGTGATAATTCAAGTTTGCCAATTTGCAGCTGTTTTGAGGGGTTTGAGGCCAGGAATCCTGAGGAATGGAACAGGGATAATTGGACTAGTGGGTGTGTGAGGAATGTACCACTGAATTGTGACAAGTTGAAGAATGGGAGTGAAGTTCAACAAGATGGGTTTCAGGTGTACCATAATATGAAAGTGCCTGACTTTGCAGAGAGATCAGATGGTAACCAAGACAAATGCGGGAGAGATTGCTTAGCAAATTGCTCTTGCTTGGCATATGCATATGATTCTTATATTGGTTGCATGTATTGGAGTAGGGACTTAATTGATTTGCAGAAATTTCCAAATGGAGGGGTTGATCTCTTCCTTCGTGTCCCACCACAACTTCTTGGGAAGAGAATACAGGGGATTAATCATTGGCATTACGGGGCAATTGGAGCATTAACCATTGGTGTCGGTGCTTATCTCTTGTGGCGGAAATGTACTCCTAAGCATAAAGGAAGTCAACCTCAATACTTGATTACCGgaggacaaaaacaaattaaactgGAAGAGCTGCcactatttgaatttgaaaagctAGCCACTGCTACAAACAACTTTCACTTAGCTAATATGCTTGGCAAGGGAGGTTTTGGTCCAGTATACAaggGACAACTGGAAAATGGACAAGAAATAGCTGTGAAAAGACTCTCAAAAGCATCTGGACAAGGATTAGAAGAATTCATGAATGAAGTAGTAGTGATTTCTAAACTTCAACATCGCAATCTAGTAAGACTTCTTGGTTGTTGTATAGAACGAGATGAACAGATGTTGGTCTATGAATTTATGCCAAATAAAAGTTTGGATTCATTTCTCTTTGGTTAG 1749 0.3991 MGFLTHINYLLIFLLIFSGFYLGVSSVNDTITSTRSIRDPETISSNSGDFKLGFFSPEKSTHRYVAIWYLSESYIIWIANRDQPLNDSSGVFKTDKDGNLVVLDAQNSVIWSTNVSISATNTTAQLDDLGNLILLDDTSGTVIWDSFTHPADAAVPGMKIAANRVTGKKIAYVSWKSSSDPSSGYFTGSLERLDAPEVFFWYNKTKPYWRTGPWNGRVFLGSPRMLTEYLYGWRFEPNDNGTAYLTYNFANPSMFGILTITPHGTLKLVEFMNKKELLALEVDQNECDFYGKCGPFGSCDNSSLPICSCFEGFEARNPEEWNRDNWTSGCVRNVPLNCDKLKNGSEVQQDGFQVYHNMKVPDFAERSDGNQDKCGRDCLANCSCLAYAYDSYIGCMYWSRDLIDLQKFPNGGVDLFLRVPPQLLGKRIQGINHWHYGAIGALTIGVGAYLLWRKCTPKHKGSQPQYLITGGQKQIKLEELPLFEFEKLATATNNFHLANMLGKGGFGPVYKGQLENGQEIAVKRLSKASGQGLEEFMNEVVVISKLQHRNLVRLLGCCIERDEQMLVYEFMPNKSLDSFLFG 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0548 582 CDD PAN_AP_plant 334 420 - -
Ssu2g0548 582 ProSiteProfiles EGF-like domain profile. 283 319 IPR000742 -
Ssu2g0548 582 Pfam D-mannose binding lectin 75 176 IPR001480 -
Ssu2g0548 582 ProSiteProfiles Protein kinase domain profile. 495 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0548 582 Pfam S-locus glycoprotein domain 209 316 IPR000858 GO:0048544
Ssu2g0548 582 SMART blect_4 34 150 IPR001480 -
Ssu2g0548 582 Gene3D - 23 149 IPR036426 -
Ssu2g0548 582 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 18 581 - -
Ssu2g0548 582 Pfam PAN-like domain 347 405 IPR003609 -
Ssu2g0548 582 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 181 IPR036426 -
Ssu2g0548 582 SMART ntp_6 347 419 IPR003609 -
Ssu2g0548 582 ProSiteProfiles PAN/Apple domain profile. 338 420 IPR003609 -
Ssu2g0548 582 Gene3D Phosphorylase Kinase; domain 1 470 570 - -
Ssu2g0548 582 SUPERFAMILY Protein kinase-like (PK-like) 480 581 IPR011009 -
Ssu2g0548 582 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 18 581 - -
Ssu2g0548 582 Pfam Protein tyrosine and serine/threonine kinase 496 580 IPR001245 GO:0004672|GO:0006468
Ssu2g0548 582 ProSiteProfiles Bulb-type lectin domain profile. 28 147 IPR001480 -
Ssu2g0548 582 CDD B_lectin 34 150 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0548 Ssu-Chr2 31838366 31846223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0548 438 581 Receptor kinase-like Gene Family AT4G23190 50.000 3.04e-37 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu2g0548 S_locus_glycop 9.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0548 - - gmx:100786846 995.342