Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0544 ATGGCGACCCCAAACGACGCCGCATCGCCGACGAAGAAGCCCCAGCCCATCCCCTGGACCCACCAGGAAACGGTCCACCTCATCCGCGCCTACCAGGAGAAGTGGTACGCGCTCAAGCGCGGCCCCCTCCGCCACAACCAGTGGGAGGAGGTCGCCGTCGTCGTCGCCGCCCGCTGCGGCTACGACCTCGCCCACCCCGCCAAGTCCGCCCTCCAGTGCCGCCACAAGATGGAGAAGCTCCGCCAGCGCCACCGCGCCCAGAAGAAGCaggccgccgccgccgccgccgccgccgccccCCGCCCCGCCGCCTCGTGGCAGTACGTCGCCCTCATGGACGACCTAGAACGCGGCCCCCTCCCCATCTCCGCCCTCGCCCCTCTCAAAAACGACGCCGACATCACCGACGACGACAACGACAACGACAACGAGGAAGACGCTAATCGGAACGACGATGATGAGATTGAAAGGGAGAGCTATATTAATATCAAGTCGAAGAGTATTAATTGTATTCTTAGCGAGAGGCCCTCGAGAATGAGAACTAGTGATAGAGGGTTTTCGAGGGAGCCCGTTGACGAGGACGACGACGACGTTTTGGGGTTGACGGCGGAGATGAGGGCTTTCGCGGAGAGCTTTATTGGAATGGAGAGTTTGAAGATGGAGATGATGAAGGAAACGGAGATGTGTAGGTTGGAGATGGAGAAGAAGCGGATCCAGATGATTCTGGAATCGCAGCGGAGGATCGTTGATTCCATTGGGAGGGCGTTTGGGTCGAACAAGAGGATCAAGATTACTCAACAAATCTGA 807 0.5626 MATPNDAASPTKKPQPIPWTHQETVHLIRAYQEKWYALKRGPLRHNQWEEVAVVVAARCGYDLAHPAKSALQCRHKMEKLRQRHRAQKKQAAAAAAAAAPRPAASWQYVALMDDLERGPLPISALAPLKNDADITDDDNDNDNEEDANRNDDDEIERESYINIKSKSINCILSERPSRMRTSDRGFSREPVDEDDDDVLGLTAEMRAFAESFIGMESLKMEMMKETEMCRLEMEKKRIQMILESQRRIVDSIGRAFGSNKRIKITQQI 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0544 268 Coils Coil 77 97 - -
Ssu2g0544 268 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 10 177 IPR044823 -
Ssu2g0544 268 Pfam Myb/SANT-like DNA-binding domain 18 114 IPR044822 -
Ssu2g0544 268 ProSiteProfiles Myb-like domain profile. 18 81 IPR001005 -
Ssu2g0544 268 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 191 263 - -
Ssu2g0544 268 Gene3D - 19 86 - -
Ssu2g0544 268 MobiDBLite consensus disorder prediction 135 152 - -
Ssu2g0544 268 MobiDBLite consensus disorder prediction 128 158 - -
Ssu2g0544 268 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 10 177 - -
Ssu2g0544 268 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 191 263 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0544 Ssu-Chr2 31731945 31732751 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0544 19 115 Trihelix Transcription Factor Family AT3G14180 25.773 2.03e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu2g0544 Myb_DNA-bind_4 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0544 - - gmx:100810821 374.785