Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0541 ATGGACTTGAGGGATGCATGGGCTGGCTTCTTTCTGTTTTGTAGCTTCTGGCTTGTCACTTTCTGCGAACAAGATGGTTTCTTGAGTCTTTCTTGTGGCGGAAGAACCAGTTTCAGGGATTCATCTAACATTTTATGGGTCCCAGACACCACCTACATTACTACAGGCAAGATTACCACCATCACTTACAGTGATGGTTCCTCCTCATTGAACATCTCAGCTCGGTTTTTCCCAAATTCCAGAAGGCGAAAATGTTACAGAATACCAGCAAACAATTCAACAACTTTGGTTCTTGTTAGAGCAAAATTAGTGTACAAGAACTATGATGGACAAGGGAAACCCCCTAAGTTCTCTGTTTCTATTGGGACAGCTATTGCTGCCACCATAGATCTTGCTGAAGATGATCCATGGAGTGAAGAGTTTCTATGGACTGTCAACAAGGATACGCTGGTATTCTGCTTAAATGCAATTCCAAATGGTGGTTCACCTATAATTTCTTCCCTTGAAATCAGAGCACTTCCTCAAGGAGCCTACACAAATGGCATGGCAGATTTTCCTAATAAGTTGCTAAGGAAGAGTTATAGAATTGATTGTGGACATTCCAATGATTCTATAAGGTATCCCTTGGATCCATTTGATAGAATATGGAATGCTGATAGAAGTTTTACACCCTTTCATGTTGCAACTAGGTTTAAGATTCAACTTAGCTTCAATCAGTCTAGTCTTGTGGAAGAACCACCAGCAGCTGTTCTTCAAACTGGGAGAGTTTTGGCTCGAAGAAATATGCTGACATACAACCTCCCTCTTGATACATTAGGGGACTACTACATCATCCTTTACTTTGCTCCAATTCTTCCTGTCTTCCCCTCATTTGATGTCTTTATAAATGGAGAACTAGTAAAATCAAACTACACAATAAATAGCTCAGAAACCAGTGCCTTATACATAACGCGAAAGGGAATTGGGAGCTTGAATATAACGTTGAAGAGTATCAGCTTTTACCCTCAGATCAATGCATTTGAGGTTTATCAGATGGTTGACATTCCATCTGATGCCTCCTCAACCACAGTTTCAGCACTGCAGGTTATTCAGCAGTCCACTGGATTGGATCTTGGATGGCAGGATGATCCATGCCTTCCTTCCCCATGGGAGAAAATTAACTGTGAAGGAAGCCTTGTTACATCATTGGATCTTTCAGACATAAATTTGAGATCAATTAGTCCTACATTCGGTGACTTAATAGACCTCAAaacattGGATTTGCACAACACATCGCTTTCTGGTGAAATACAGAATTTGGAGGGCTTGCAACATCTTGAGAAACTGAACCTGAGTTTCAATCAACTAACATCCATTGGTGCAGATCTCGAGAACTTGATTAACCTTCAAATATTAGACTTGCAGAACAATAGTCTGATGGGAGTAGTGCCTGATAGCTTGGGAGAGTTAGAGGACCTCCACTTACTGAATCTGGAAAACAACAAACTACAAGGTCCACTACCACAGTCTTTGAACAAAGAAACATTAGAGATCAGGACATCTGGTAATTTGTGTCTTACCTTTTCCACAACATCATGTGATGATGCATCATCCAATCCTCCAATTGAGGCACCACAAGTCACTGTAGTTCCTCAGAAGGAGCACAATGTACATAACCATCTAGCAATCATATTAGGCATGGTTGGAGGAGCCACACTAGCCTTTCTCTTAATGTGTATTTCAGTATTGCTATACAAAACTAAACAGCAATATGAAGCCTCCCACCCATCAAGGGCAGAAATGGATATGAGGAACTGGGGTGCTGCCAAAGTCTTTTCCTACAAAGAAATCAAAGTAGCTACAAAAAACTTCAAAGAAGTCATAGGGAGGGGCAGTTTTGGATCTGTTTATCTTGGAAAACTTCCAGATGGAAAATCTGTAGCTGTCAAAGTTCGGTTTGACAAATCTCAACTGGGTGCTGATTCTTTCATCAATGAGGTTAATCTTTTGTCGAAAATCCGGCATCAAAATCTTGTGTCTTTGGAAGGATTTTGTCATGAAAGAAAGCATCAGATATTAGTTTATGAGTACTTGCCTGGTGGATCCCTGGCCGATCACCTCTACGATACAAACAGTCAAAAACCTCCTTAA 2130 0.4066 MDLRDAWAGFFLFCSFWLVTFCEQDGFLSLSCGGRTSFRDSSNILWVPDTTYITTGKITTITYSDGSSSLNISARFFPNSRRRKCYRIPANNSTTLVLVRAKLVYKNYDGQGKPPKFSVSIGTAIAATIDLAEDDPWSEEFLWTVNKDTLVFCLNAIPNGGSPIISSLEIRALPQGAYTNGMADFPNKLLRKSYRIDCGHSNDSIRYPLDPFDRIWNADRSFTPFHVATRFKIQLSFNQSSLVEEPPAAVLQTGRVLARRNMLTYNLPLDTLGDYYIILYFAPILPVFPSFDVFINGELVKSNYTINSSETSALYITRKGIGSLNITLKSISFYPQINAFEVYQMVDIPSDASSTTVSALQVIQQSTGLDLGWQDDPCLPSPWEKINCEGSLVTSLDLSDINLRSISPTFGDLIDLKTLDLHNTSLSGEIQNLEGLQHLEKLNLSFNQLTSIGADLENLINLQILDLQNNSLMGVVPDSLGELEDLHLLNLENNKLQGPLPQSLNKETLEIRTSGNLCLTFSTTSCDDASSNPPIEAPQVTVVPQKEHNVHNHLAIILGMVGGATLAFLLMCISVLLYKTKQQYEASHPSRAEMDMRNWGAAKVFSYKEIKVATKNFKEVIGRGSFGSVYLGKLPDGKSVAVKVRFDKSQLGADSFINEVNLLSKIRHQNLVSLEGFCHERKHQILVYEYLPGGSLADHLYDTNSQKPP 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0541 709 Pfam Leucine rich repeat 438 496 IPR001611 GO:0005515
Ssu2g0541 709 ProSitePatterns Protein kinases ATP-binding region signature. 621 643 IPR017441 GO:0005524
Ssu2g0541 709 SUPERFAMILY L domain-like 358 506 - -
Ssu2g0541 709 PANTHER OS07G0107800 PROTEIN-RELATED 10 704 - -
Ssu2g0541 709 Pfam Protein tyrosine and serine/threonine kinase 617 705 IPR001245 GO:0004672|GO:0006468
Ssu2g0541 709 Gene3D - 192 347 - -
Ssu2g0541 709 ProSiteProfiles Leucine-rich repeat profile. 438 460 IPR001611 GO:0005515
Ssu2g0541 709 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 704 - -
Ssu2g0541 709 Gene3D Ribonuclease Inhibitor 356 528 IPR032675 -
Ssu2g0541 709 SUPERFAMILY Protein kinase-like (PK-like) 589 705 IPR011009 -
Ssu2g0541 709 SMART LRR_typ_2 459 482 IPR003591 -
Ssu2g0541 709 SMART LRR_typ_2 436 458 IPR003591 -
Ssu2g0541 709 Gene3D Phosphorylase Kinase; domain 1 578 690 - -
Ssu2g0541 709 Pfam Malectin-like domain 30 345 IPR024788 -
Ssu2g0541 709 ProSiteProfiles Protein kinase domain profile. 615 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0541 Ssu-Chr2 31602141 31606891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0541 10 707 Receptor kinase-like Gene Family AT5G48740 57.880 0.0 788
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Ssu2g0541 Malectin_like 7.1e-52 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0541 - - gmx:100812804 1272.69