Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0540 ATGGCCCATCTTGCACACGTACAATACTACATACATACACTTTTTCATTTGTTCAAAAATCCCTTCAGAAGGAACAATAGCTACCCTTCAgagcaagagagagaaagaaaaatgtccCTCCCAAGACCCAGTGAGGGTAAAGCCCCTTCTCAGCTGAAAGAAgtagcagcagcagcagcaaccTCATCCTCTTCTTCATGGAATAGGCTACATACTTTCCCTCCTTTAACTCTACAGAACAAGAGTAGCAAAATTGAAGACAGTGATGAAGATATGTTCACAGTTCCAGATGTGGAAGCCACACCAACTAGTGTTCATTCTGCAGTGACTCTTCCCAATAGTAACCTTAATCAACGTAATGTGATAGACCCTCAATTTCAAACTGGCTTTCCTGGAAAGCGCCGCAGGGGAAGAAACCCTGCAGACAAGGAGCATAGACGCCTCAAGagGTTGTTGAGGAACAGGGTCTCTGCTCAACAAGCCCGCGAAAGAAAGAAGGTTTATGTGAATGACTTGGAATCAAGAGCTAGAGAGTTGCAAGAAAAAAACGCTATCTTAGAAGAGCGTATCTCTACTTTGATCAATGAGAACACCATGCTGCGAAAGGTTCTTATGAACGCGAGGCCAAAAGTTGATGATAGCAATGAACAAAAGCAAGACCAGTTAAGTAAGAGCTAG 678 0.3982 MAHLAHVQYYIHTLFHLFKNPFRRNNSYPSEQERERKMSLPRPSEGKAPSQLKEVAAAAATSSSSSWNRLHTFPPLTLQNKSSKIEDSDEDMFTVPDVEATPTSVHSAVTLPNSNLNQRNVIDPQFQTGFPGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLESRARELQEKNAILEERISTLINENTMLRKVLMNARPKVDDSNEQKQDQLSKS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0540 225 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 144 207 IPR004827 GO:0003700|GO:0006355
Ssu2g0540 225 PANTHER TRANSCRIPTION FACTOR HY5-LIKE 51 225 - -
Ssu2g0540 225 SMART brlzneu 142 206 IPR004827 GO:0003700|GO:0006355
Ssu2g0540 225 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 51 225 IPR044280 GO:0000981|GO:0045944
Ssu2g0540 225 MobiDBLite consensus disorder prediction 28 42 - -
Ssu2g0540 225 MobiDBLite consensus disorder prediction 123 144 - -
Ssu2g0540 225 Gene3D Single helix bin 165 206 - -
Ssu2g0540 225 Coils Coil 162 196 - -
Ssu2g0540 225 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 149 164 IPR004827 GO:0003700|GO:0006355
Ssu2g0540 225 MobiDBLite consensus disorder prediction 22 50 - -
Ssu2g0540 225 CDD bZIP_HY5-like 156 197 - -
Ssu2g0540 225 Pfam bZIP transcription factor 143 202 IPR004827 GO:0003700|GO:0006355
Ssu2g0540 225 SUPERFAMILY Leucine zipper domain 146 205 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0540 Ssu-Chr2 31596722 31599380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0540 125 214 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 75.824 1.06e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu2g0540 bZIP_1 1.7e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0540 K16241 - gmx:778143 325.865