Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0539 ATGGCACTACTTCAGCAAATCCTTCAAAACAAACAAGTTTTCAACTTCCACCTCTACCACCACCTCCCTAACCTTGATCGTGACAGCGATGTGTTTGTCAGTTGGGCTTGGCCCAAAAAGCCCAACCCCCAACCCAAATACTTTGCACCTCCTCATGTTCCCAACCCCACGccgagagaagaagaagaagaagcagcgGTAGCAGCAAAAGGCGTTGTTAATGTGGTGAGAGGCAAAAGAAGATGGTGTCAGGTTCAGGTATCTGCGCAAAACGCGTGCCTGGCACCACATGCTGGTCGGTTGGTGTCGATCGTGGCAAAGGAGCTGCTGAACGGGCAGAGAGTGGTGGTTGTGCGGTACGAAGAGATTTGCATCTCTGGGGGTCTCGTTAGGCAGAAAATGAAGTTCTTTTTCTGCCTCCGCAAACGCATGAACACCAAACCCTCCCACGGACCCATCCACTTCCATGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGGTccgttctttttcttttctttgcaaaacttagatatagttttTTCGCCTGTTGTTGTTCACCTCGGTAA 573 0.4607 MALLQQILQNKQVFNFHLYHHLPNLDRDSDVFVSWAWPKKPNPQPKYFAPPHVPNPTPREEEEEAAVAAKGVVNVVRGKRRWCQVQVSAQNACLAPHAGRLVSIVAKELLNGQRVVVVRYEEICISGGLVRQKMKFFFCLRKRMNTKPSHGPIHFHAPSKIFWRTVRGSVLFLFFAKLRYSFFACCCSPR 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0539 190 Gene3D Ribosomal protein L13 58 173 IPR036899 GO:0003735|GO:0005840|GO:0006412
Ssu2g0539 190 PANTHER 60S RIBOSOMAL PROTEIN L13A-4 98 170 - -
Ssu2g0539 190 SUPERFAMILY Ribosomal protein L13 98 168 IPR036899 GO:0003735|GO:0005840|GO:0006412
Ssu2g0539 190 CDD Ribosomal_L13 99 168 IPR005822 GO:0003735|GO:0005840|GO:0006412
Ssu2g0539 190 Pfam Ribosomal protein L13 98 169 IPR005822 GO:0003735|GO:0005840|GO:0006412
Ssu2g0539 190 PANTHER RIBOSOMAL PROTEIN L13 98 170 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0539 Ssu-Chr2 31578506 31581981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0539 99 170 Cytoplasmic Ribosomal Protein Gene Family AT3G24830 83.333 1.50e-37 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0539 K02872 - gmx:100499978 127.487