Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0516 ATGGACATGGGGCCTGGTTGCAGACTAGAGATTAGCACCAGGGAAAGCACACGATATAGTTTGATAAGGGATTCTAATGCTGGTGACGCCCCTGGTTTAACCACTAAGCAAAGAATGTCTACTTTCAcaaaccaaaaccaaagaaTCTATGAtcacattcaaataaatattccaACGACTTATGAGATGGAGCAGTACAATTTCAACATTGCTAATGATGTACCTCTTCTTGGACGCTACGAATGGGTTCAAGTACATCACTAG 264 0.3674 MDMGPGCRLEISTRESTRYSLIRDSNAGDAPGLTTKQRMSTFTNQNQRIYDHIQINIPTTYEMEQYNFNIANDVPLLGRYEWVQVHH 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0516 87 PIRSF CKI_KRP_plant 8 66 IPR044275 GO:0004861|GO:0045736|GO:0051726
Ssu2g0516 87 PIRSF CKI_KRP_plant 63 87 IPR044275 GO:0004861|GO:0045736|GO:0051726
Ssu2g0516 87 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 10 85 - -
Ssu2g0516 87 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 4-RELATED 10 85 IPR044275 GO:0004861|GO:0045736|GO:0051726
Ssu2g0516 87 Gene3D p27 32 87 IPR044898 -
Ssu2g0516 87 Pfam Cyclin-dependent kinase inhibitor 62 85 IPR003175 GO:0004861|GO:0005634|GO:0051726
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0516 Ssu-Chr2 30385660 30386454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0516 13 86 Core Cell Cycle Gene Families AT5G48820 40.000 5.27e-12 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0516 - - gmx:100782146 82.0333