Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0482 ATGAAGGAGGGTGGTAGAAAACAAGGTGCAATGTCGCCATGCGCGGCATGCAAGCTTCTTCGAAGGAGATGTGCACAGGATTGCACGTTTGCTCCTTATTTCCCTGCAGATGAGCCCCATAAGTTTGCCAGTGTCCACAAGGTTTTTGGGGCTAGCAATGTCAACAAAATGTTACAGGAATTACCAGAGCACCAACGAAGTGATGCAGTTAGTTCAATGGTATATGAAGCCAATGCAAGGGTGAGAGACCCTGTGTATGGATGTGTGGGAGCCATATCCTCTCTGCAGCAACAAGTTGATGGGTTACAAACCCAGTTGGCACTTGCACAAGCAGAGGTTGTGCACATAAGAATGCGCCAAGTGTCAACTTCATCTGATCAACACAAACCAGTGCGTGCAGCCTCCAATTCATCCTCAGAGAACTTATCCCCATCAAGTAGGCTCGCCAAGTCTCTTTTCGCTATGGATATGGTCGTTGATCAGCCAAACATGGGGGAGTCCTTGTGGTCATGTTAG 516 0.4806 MKEGGRKQGAMSPCAACKLLRRRCAQDCTFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDGLQTQLALAQAEVVHIRMRQVSTSSDQHKPVRAASNSSSENLSPSSRLAKSLFAMDMVVDQPNMGESLWSC 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0482 171 Coils Coil 92 112 - -
Ssu2g0482 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 168 - -
Ssu2g0482 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 168 - -
Ssu2g0482 171 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Ssu2g0482 171 MobiDBLite consensus disorder prediction 120 144 - -
Ssu2g0482 171 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0482 Ssu-Chr2 27901349 27905103 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0482 1 171 AS2 family AT1G31320 69.714 3.04e-74 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu2g0482 LOB 3.1e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0482 - - ccaj:109811748 299.286