Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0477 ATGGAACGGTGTTTATTACCACAAAGTTTGGCTTTTGCACTACTTGCTGTTTGCATCTTCAACTGCTCGGTTAATGCCACTACAGATCCTAATGAAGCGAGAGTTTTGAATGCAATCTTTAGCAAATGGGGTATAACTGCAAATCCTGATCACTGGAACATAAGTGGTGACCTATGCAGTGGAAGGGCCATCGACGACACATCTATTTCTGATACAACTTACAACCCATTAATCAAATGTGTTTGTTTCAGAGACAGTGGCAATACTTGCCACATTACCAAACTGAAGGTTTATGAATTGAGCGTGGTGGGTGAAATTCCAAAAGAGTTATGGACTCTCACTTACCTCACAGAATTGGATCTTCGCCACAATCACTTGACCGGCTCTCTACCTCCAGCCATTGGAAATCTAACTCGTATGGAATATTTAACCTTTGGCATCAATGCTTTGTCAGGGGAGCTTCCGCAGGAGTTAGGCAATCTTACAGAATTGAAATCACTGAGTTTAACAGCAAACAACTTCTCCGGTTCTCTACCATCTCGACTTGGGAATTTGCTAAAATTAGAACAATTTTTCTTGCATAGTTCAGGAATTAGTGGTCCAATTCCAACCACATTTGCAAATCTGAAGAATTTGAAGAGAGTATGGGCTATGGATGTGGAACTCACAGGCAGGATACCAAGCTTCATAGGGAATTGGTCTAATCTTAACGTCTTGAGGTTTCAGGGTAATTCTTTTGAAGGCCCAATTCCCTTGTCATTTTCCAATTTGACTTCTCTGATAGAGTTGagaataaatgatttattaaatggGAGCTCTTCACTGGcatttttgaagaatttgaaATCTTTGAATATCTTAGAactgagaaataataatatttctgaTTCAATTCCATCTTTTATTGGAGATTTGCAAAATTTGACACAACTGGATTTAAGCTTCAATAATATCACGGGACAAATTCCAGACTCAATTTTCAATTTGGGTTCACTTATTTACTTGTTTCTTGGAAATAACAAAATCAGTGGTGCCCTCCCTACCCAGAAAAGTGAGTTTCTTCTCAACATAGACTTGTCGTACAACGATCTGTCGGGGACCCTTCCTTCTTGGGTAAACCAACAAAATTTACAGCTCAATTTAGTAGCCAACAACTTGACAATAGAGAGTTCAAATAGCAGGGGTTTGCCTTCTAGGCTCGactgtttacaaaaaaattttccTTGCAACCGTGGTATTGGAAGATATTATGACTTTGCAATAAAGTGTGGTGGTCCCCAAATTACATCCTCAAATGGAATTGTGTTTGAAATGGACAACCAATCACTTGGTCCAGCTACCTATTTTGTTACTGATACAAATAGATGGGGCGTTAGTAATGTCGGATTATTCACTGGGAGCAGCAATCGTCAATACAAAAGTTCTGTGTCTAATCCGTTCACTCACACTGTGGATCCAGAGCTCTTCCAGACAGCTCGACTCTCTGCTTCATCACTGAGATATTATGGCCTGGGGCTGGAAAATGGTTTCTACAACGTCACCCTCCAATTTGCAGAAACAGCTATCCTGGATAATTCTGAATGGAAAAGTCTTGGCAGAAGAATCTTTGATATTTATATTCAGGGAACTCGGGTTTTAAaggattttgatataaaaaggGAGGCTGAGGGCATCTCTTTCAATGCTGTCCAAAAGAAATTTAGGGTTGAAGTGTTAGAAAATTATCTAGAAGTCCATCTTTTTTGGGCTGGAAAAGGGACTTGTTGCATACCAGCTCAAGGTACTTATGGACCCCTGGTTTCAGCCATTAGTGCTATCCCAGATTTTACACCTAGTGTTAGCAACAAACCACCAAGCAGTAAAAGCAATAGAGCTGGCCTAATCGTGGGGATTGTTGTTGGTGTTGGAGCTGTAAGCTTTCTATTTGTTCTTGCAATCTTCTATATCATTCGTAAACGAAAACgccatgatgatgatgaagAGCTTTTAGATATTGACGCAAAGCCATACACTTTTAGTTATTCTGAGTTGAAGAATGCTACAGATGACTTTAATCTTGGCAACAAGCTTGGAGAGGGAGGTTTTGGGCCTGTTTATAAGGGGACACTTAATGATGGAAGAGTTATCGCTGTGAAACAACTATCTGTGCAATCCAATCAAGGAAAGAGTCAGTTCATAGCTGAGATTGCCACTATCTCTGCTGTGCAACATCGTAATCTTGTCAAATTATATGGATGTTGCATTGAAGGAAATAAAAGACTTCTGGTCTATGAGTATCTTGAAAACAGGAGTCTTGATCAAGCACTATTTGGAAATTCTTTAAACCTCAATTGGTCTGCACGCTATGATATATGCTTGGGTATAGCAAGAGGTTTAACTTATCTACATGAAGAGTCACGAGTCCGTATTGTACACCGTGATGTGAAGTTTAGTAATATTCTTCTCGATTATGAGCTTATACCAAAAATATCTGATTTTGGGTTGGCAAAATTATACGATGACAAAAAGACCCATATAAGCACTGGTGTGGCAGGTACAATTGGCTATCTTGCACCGGAGTATGCCATGCGTGGACACCTTACAGAGAAAGTTGATGTATTTTCCTTTGGTGTTGTGCTTTTGGAGCTAGTTAGTGGAAGACCAAATTCTGATTCAAGTTTGGAAGGGGACAAGATGTATCTTCTAGAATGGGCCTGGCATttacatgaaaacaaaaatgtaacCGACCTTGTAGATCCTAGATTATCTGATTTTAATGAGGAAGAAGTAAAACGAATTGTGGGAATAGCTCTCTTGTGCACTCAAACATCACCAACACTACGACCATCGATGTCCCGTGTGGTAGCAATGCTTTTAGGAGATATTGAAGTGAGCACTGTAACGTCGAGGCCTGGATACTTGACTGACTGGAAATTTGATGATGTGAGTAGCTTCATGACTGAGGTTGCAACCAAAGGATCAGACTCAAGTTTTTACAATTCTTCAGCAAGTATGAGCATAGTGGGTGGTGCAGATCATTCACCAATTGATGCTTCTAAACCCATCCTTCATGAGACTCTAAGTGGGGGTAGGTAA 3075 0.386 MERCLLPQSLAFALLAVCIFNCSVNATTDPNEARVLNAIFSKWGITANPDHWNISGDLCSGRAIDDTSISDTTYNPLIKCVCFRDSGNTCHITKLKVYELSVVGEIPKELWTLTYLTELDLRHNHLTGSLPPAIGNLTRMEYLTFGINALSGELPQELGNLTELKSLSLTANNFSGSLPSRLGNLLKLEQFFLHSSGISGPIPTTFANLKNLKRVWAMDVELTGRIPSFIGNWSNLNVLRFQGNSFEGPIPLSFSNLTSLIELRINDLLNGSSSLAFLKNLKSLNILELRNNNISDSIPSFIGDLQNLTQLDLSFNNITGQIPDSIFNLGSLIYLFLGNNKISGALPTQKSEFLLNIDLSYNDLSGTLPSWVNQQNLQLNLVANNLTIESSNSRGLPSRLDCLQKNFPCNRGIGRYYDFAIKCGGPQITSSNGIVFEMDNQSLGPATYFVTDTNRWGVSNVGLFTGSSNRQYKSSVSNPFTHTVDPELFQTARLSASSLRYYGLGLENGFYNVTLQFAETAILDNSEWKSLGRRIFDIYIQGTRVLKDFDIKREAEGISFNAVQKKFRVEVLENYLEVHLFWAGKGTCCIPAQGTYGPLVSAISAIPDFTPSVSNKPPSSKSNRAGLIVGIVVGVGAVSFLFVLAIFYIIRKRKRHDDDEELLDIDAKPYTFSYSELKNATDDFNLGNKLGEGGFGPVYKGTLNDGRVIAVKQLSVQSNQGKSQFIAEIATISAVQHRNLVKLYGCCIEGNKRLLVYEYLENRSLDQALFGNSLNLNWSARYDICLGIARGLTYLHEESRVRIVHRDVKFSNILLDYELIPKISDFGLAKLYDDKKTHISTGVAGTIGYLAPEYAMRGHLTEKVDVFSFGVVLLELVSGRPNSDSSLEGDKMYLLEWAWHLHENKNVTDLVDPRLSDFNEEEVKRIVGIALLCTQTSPTLRPSMSRVVAMLLGDIEVSTVTSRPGYLTDWKFDDVSSFMTEVATKGSDSSFYNSSASMSIVGGADHSPIDASKPILHETLSGGR 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0477 1024 SUPERFAMILY L domain-like 73 391 - -
Ssu2g0477 1024 Gene3D - 417 607 - -
Ssu2g0477 1024 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 130 1010 - -
Ssu2g0477 1024 ProSiteProfiles Leucine-rich repeat profile. 307 329 IPR001611 GO:0005515
Ssu2g0477 1024 Pfam Protein tyrosine and serine/threonine kinase 685 951 IPR001245 GO:0004672|GO:0006468
Ssu2g0477 1024 Gene3D Transferase(Phosphotransferase) domain 1 760 961 - -
Ssu2g0477 1024 Gene3D Phosphorylase Kinase; domain 1 646 759 - -
Ssu2g0477 1024 Pfam Leucine rich repeat 283 342 IPR001611 GO:0005515
Ssu2g0477 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Ssu2g0477 1024 CDD STKc_IRAK 690 951 - -
Ssu2g0477 1024 ProSiteProfiles Protein kinase domain profile. 684 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0477 1024 SMART LRR_typ_2 281 303 IPR003591 -
Ssu2g0477 1024 SMART LRR_typ_2 305 329 IPR003591 -
Ssu2g0477 1024 SMART LRR_typ_2 161 185 IPR003591 -
Ssu2g0477 1024 SMART LRR_typ_2 113 137 IPR003591 -
Ssu2g0477 1024 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 130 1010 - -
Ssu2g0477 1024 SUPERFAMILY Protein kinase-like (PK-like) 667 951 IPR011009 -
Ssu2g0477 1024 Pfam Malectin domain 418 603 IPR021720 -
Ssu2g0477 1024 Gene3D Ribonuclease Inhibitor 271 394 IPR032675 -
Ssu2g0477 1024 SMART serkin_6 684 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0477 1024 Gene3D Ribonuclease Inhibitor 29 270 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0477 Ssu-Chr2 27369606 27441399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0477 87 270 Receptor kinase-like Gene Family AT1G56120 26.794 4.08e-09 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu2g0477 PK_Tyr_Ser-Thr 4.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0477 - - gmx:100780567 1769.98