Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0475 ATGAACGAAGAAAATAGGGATTATTATGCATGTCCCTTGTGCAGGCATCAACGTAGACGTCACGATGATAATTGTGTATTTGGACAATACTTTCCTGATAATAGGTCGACAGACTTTGAGAGAGCTTGTAGGCTCTTTGGTTTGGGCAACCTGCTCAGACTAATGCGTTCTGTGGAACCATCTGAAAGGCAAGTTGTTGCGGATTCCATTTTAAGGGAGGCTAACACTTGGGCAAATGACCCAATTCGTGGTGCCTTTGGTCATGCGGTCAATTTGACATCCGAAATTCACTTTTTTGAAGAAGAACTAGAAACTGTAAACAAATTGCTTGCATATTGTCAAGATCAAGCAAGGCAAGCAAACCCAACATCACAAATGGGTATTTCATCTTCCTCTAACATCCCACAACAAAGTACCCAACTTGGAGGTTCTAGCACACAAATTCCAAGCTTGGGTGGAGCAGATATCATTGCGAGTTCTTTTGAAAAAGGAGATTCAAGTACTGTTGCATCCAAGGAGAATGAGATTATTGTTAAAGAGAGAGATTCTGAAGTTGATGACAAGGAGAAAGACATTACTTCTGACAAAGATACCTATGTAAAAGACTAG 609 0.4056 MNEENRDYYACPLCRHQRRRHDDNCVFGQYFPDNRSTDFERACRLFGLGNLLRLMRSVEPSERQVVADSILREANTWANDPIRGAFGHAVNLTSEIHFFEEELETVNKLLAYCQDQARQANPTSQMGISSSSNIPQQSTQLGGSSTQIPSLGGADIIASSFEKGDSSTVASKENEIIVKERDSEVDDKEKDITSDKDTYVKD 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0475 202 MobiDBLite consensus disorder prediction 121 148 - -
Ssu2g0475 202 MobiDBLite consensus disorder prediction 180 202 - -
Ssu2g0475 202 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Ssu2g0475 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 193 - -
Ssu2g0475 202 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Ssu2g0475 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25-LIKE 9 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0475 Ssu-Chr2 27239431 27240288 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0475 11 146 AS2 family AT3G50510 33.571 4.76e-22 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu2g0475 LOB 5.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0475 - - gmx:102660641 229.565