Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0462 ATGGGAAACTCGAATACTAAAAAGCGCGAATTTTCCAGAAACGTTGTAGAGAGAATACCCTCTCCTATAAGCAGATCCttgccatcaccaccatcgCCACTAGAACCACCGCGAGAACCACCACCTATGTCTTTTAAGAAGAATCATCATGATTCGGGTTCGGGCTCGGGAAAACTAtctatcaaagaaaaatatgctCTGATTCCTGATAAGTTCGCTACCCTTGAACAGGTTACAACTGCCTTGAGGAGTGAAGGTTTAGAATCATCTAATCTTGTCCTTGGAATTGATTTCACAAAAAGCAATGAATGGACTGGAAGAATCTCATTCAACAATAGAAGCCTGCACGCTATTGGAAATACACCTAACCCCTACGAGAAAGCCATCTCTATTATTGGCAAGACTCTGGCTCCCTTTGATGATGACAACATGATTCCTTGTTTTGGCTTTGGTGACGCCACCACTCATGATAATGAAGTGTTTAGCTTTCACGATGATCATTCATCTTGCCATGGTTTTGAGGAAGTTTTGGCTTGCTATCAAAAAATTGTTCCAAACTTGAGACTTTCAGGACCAACTTCTTATGCTCCGGTGATTGAGGCTGCAATAGACATAGTTGAGAAAAGTCATGGCCAATTCCATGTGTTAGTTATTGTTGCAGATGGCCAgGTTACAACAAATGCTGCCTCTGACGATGGAGAACTCAGTCCACAAGAAGCAAAGACAATCAAAGCAATCGTTGATGCAAGTTCGTATCCCCTTTCTATTATTCTGGTTGGAGTTGGTGATGGACCTTGGGATGACATGAAAAAGTTTGATGACAAGATACCAGCTCGCGACTTTGACAATTTTCAGTTTGTTAACTTCACTGACATAATGTCTAAGAAATCAAGCCCCTCTGAAAAAGAAGCTGCTTTTGCCCTGGCTGCTCTAATGGAGATACCTTTCCAATATAAAGCAGTCATTGAACTTGGACTACTTGGTCGTGCAACAGGAAGGTCTAATAAAATAGTTCCAAGACCTCCTCCAGCTCCATATTCTCGGCTTGTGCCACCAGCTCGTGTTCTGAGCAATACGCCATCCTTCATGGATGATGTGAGAAATCAAATGGCATGTGCTATTTGTCTAACCAATGCAAAGGATTTGGCCTTTGGATGTGGTCACATGACTTGTAGAGATTGTGGATCCAAGTTAAGCAATTGTCCAATATGCCGTGAGAGGATCACCAATCGTCTTAGGGTGTTTTCTGGCTAA 1254 0.4107 MGNSNTKKREFSRNVVERIPSPISRSLPSPPSPLEPPREPPPMSFKKNHHDSGSGSGKLSIKEKYALIPDKFATLEQVTTALRSEGLESSNLVLGIDFTKSNEWTGRISFNNRSLHAIGNTPNPYEKAISIIGKTLAPFDDDNMIPCFGFGDATTHDNEVFSFHDDHSSCHGFEEVLACYQKIVPNLRLSGPTSYAPVIEAAIDIVEKSHGQFHVLVIVADGQVTTNAASDDGELSPQEAKTIKAIVDASSYPLSIILVGVGDGPWDDMKKFDDKIPARDFDNFQFVNFTDIMSKKSSPSEKEAAFALAALMEIPFQYKAVIELGLLGRATGRSNKIVPRPPPAPYSRLVPPARVLSNTPSFMDDVRNQMACAICLTNAKDLAFGCGHMTCRDCGSKLSNCPICRERITNRLRVFSG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0462 417 MobiDBLite consensus disorder prediction 42 57 - -
Ssu2g0462 417 SMART ring_2 372 404 IPR001841 -
Ssu2g0462 417 CDD RING-HC_RGLG_plant 372 415 IPR045317 GO:0061630|GO:0070534
Ssu2g0462 417 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG4 49 415 - -
Ssu2g0462 417 SUPERFAMILY RING/U-box 361 411 - -
Ssu2g0462 417 SMART VWA_4 89 292 IPR002035 -
Ssu2g0462 417 Pfam Zinc finger, C3HC4 type (RING finger) 369 409 - -
Ssu2g0462 417 Pfam Copine 114 327 IPR010734 -
Ssu2g0462 417 SUPERFAMILY vWA-like 90 272 IPR036465 -
Ssu2g0462 417 ProSiteProfiles Zinc finger RING-type profile. 372 405 IPR001841 -
Ssu2g0462 417 PANTHER COPINE FAMILY PROTEIN 1 49 415 - -
Ssu2g0462 417 MobiDBLite consensus disorder prediction 1 58 - -
Ssu2g0462 417 MobiDBLite consensus disorder prediction 24 41 - -
Ssu2g0462 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 360 416 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0462 Ssu-Chr2 26693319 26704585 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0462 K16280 - gmx:100795579 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1502 8 30783644 30795931 Ssu2g0462 2 26693319 26704585 PCT