Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0456 ATGGTTTCTAGGGGTAATGGTCTTAATCTTAGCCATTTTAGGCTTTTGAAGCGTGTTGAGTATGGAGATATTAGAAGTGTGTACCTTGTGGAACTTCAAGAAAATAAGGCATTCTTTGCCATGAAAGTAATGGATAAGGCATCACTTGCAAGTAGAAACAAGATTTTAAGAGCACAAACAGAAAGGGAGATTCTTCAACTTCTAGACCACCCTTTTTTGCCAactttatattcttattttgagACTAATAAATACTGTTGTTTAGTCATGGAGTTCTATAGTAGTGGTAATCTGCATTCTCTTCAATTGAAGCAACCTAACAAGCATTTTATGGAAGAAGCTACACGATTAGTTACTTAA 360 0.3389 MVSRGNGLNLSHFRLLKRVEYGDIRSVYLVELQENKAFFAMKVMDKASLASRNKILRAQTEREILQLLDHPFLPTLYSYFETNKYCCLVMEFYSSGNLHSLQLKQPNKHFMEEATRLVT 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0456 119 Pfam Protein kinase domain 21 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0456 119 Gene3D Phosphorylase Kinase; domain 1 3 119 - -
Ssu2g0456 119 PANTHER FLIPPASE KINASE 1-RELATED 3 117 - -
Ssu2g0456 119 ProSiteProfiles Protein kinase domain profile. 13 119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0456 119 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 3 117 - -
Ssu2g0456 119 SUPERFAMILY Protein kinase-like (PK-like) 8 111 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0456 Ssu-Chr2 26378345 26378704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0456 1 117 AGC Kinase Gene Family AT3G12690 70.940 4.42e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Ssu2g0456 Pkinase 3.6e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0456 - - gmx:100802478 196.052