Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0453 ATGCTCACAAGAACCTGTAAGTTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCGGATTGGAAAGAGGTTCCAAATATTGTTACAAGTGAAACTCCTCCTGAGAGACCAGGAGAACCAGATTGTCCATACTTTCTGAAAACTCAAAGATGCAAGTTTGGTTCAAAGTGCAAATTTAATCATCCCAAGGTTTCCTCTGAAAATGCTGATGTTTCTTCTGGCTTACCTGAGAGGCCATCAGAGCCCCCTTGTGTGTTCTACATGAAAACTGGAAATTGTAAATTTGGTGCTGCTTGTAAGTTCCATCACCCCAAGGATATCCAGATTCAGTTGTCTGACGACTTGAGTCATACTGTTGCACAGACACAAACAAATTCTATGATTGGAGGGATAACAGGAGATACACAGCCAATTAAGTCTCTTATATCTCTGTCATTGCAGAATAGCAAAGGGCTTCCTGTAAGACTGGGGGAGGTGGATTGTCCATTCTACATGAAAACTGGGAGTTGCAAGTATGGTTCCAGTTGCCGCTACAATCATCCTGACAGGAATGCAATTAATCCACCCATTGCTGCATTAGGCCCTTCTATTTTGCCATCCTCAGCTGCTAATCTGAATATTGGAGTTCTTAATCCAGCTTTGTCTGTTTATCAAGCTTTTGACCCAAGGCTGTCAAATCCAATGTCTCAGGTGGGAATTGCAGAAACTATCTATCCTCAGCGACCTGGACAGATTGAATGCGATTACTATATGAAAACCGGTGAGTGTAAATTCGGGGAAAGATGCAAATTCCATCACCCAATTGACCGCTCAGCACCATCACTGTCAAAGCAGGCCACTGTTATGCTTACTCCTGCAGGATTACCAAGAAGAGAGGGCGCTGTTATCTGTCCATATTATTTGAAAACTGGAACATGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCACCACCTGGAGAAGTTATGGAGATGGCAAAATCACAAGGAACATCTACAGCCAATGGAGGGGAAGATGAAAAGGAGACTTCTGCTCCGGAACAGAATTGA 1071 0.437 MLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVPNIVTSETPPERPGEPDCPYFLKTQRCKFGSKCKFNHPKVSSENADVSSGLPERPSEPPCVFYMKTGNCKFGAACKFHHPKDIQIQLSDDLSHTVAQTQTNSMIGGITGDTQPIKSLISLSLQNSKGLPVRLGEVDCPFYMKTGSCKYGSSCRYNHPDRNAINPPIAALGPSILPSSAANLNIGVLNPALSVYQAFDPRLSNPMSQVGIAETIYPQRPGQIECDYYMKTGECKFGERCKFHHPIDRSAPSLSKQATVMLTPAGLPRREGAVICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKSQGTSTANGGEDEKETSAPEQN 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0453 356 SUPERFAMILY CCCH zinc finger 250 276 IPR036855 GO:0046872
Ssu2g0453 356 SMART c3hfinal6 2 18 IPR000571 GO:0046872
Ssu2g0453 356 SMART c3hfinal6 248 275 IPR000571 GO:0046872
Ssu2g0453 356 SMART c3hfinal6 298 325 IPR000571 GO:0046872
Ssu2g0453 356 SMART c3hfinal6 43 70 IPR000571 GO:0046872
Ssu2g0453 356 SMART c3hfinal6 85 112 IPR000571 GO:0046872
Ssu2g0453 356 SMART c3hfinal6 162 189 IPR000571 GO:0046872
Ssu2g0453 356 SUPERFAMILY CCCH zinc finger 166 189 IPR036855 GO:0046872
Ssu2g0453 356 PANTHER CCCH ZINC FINGER/TIS11-RELATED 1 339 IPR045877 GO:0003729
Ssu2g0453 356 SUPERFAMILY CCCH zinc finger 48 69 IPR036855 GO:0046872
Ssu2g0453 356 ProSiteProfiles Zinc finger C3H1-type profile. 43 71 IPR000571 GO:0046872
Ssu2g0453 356 ProSiteProfiles Zinc finger C3H1-type profile. 248 276 IPR000571 GO:0046872
Ssu2g0453 356 MobiDBLite consensus disorder prediction 327 356 - -
Ssu2g0453 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 165 188 IPR000571 GO:0046872
Ssu2g0453 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 45 70 IPR000571 GO:0046872
Ssu2g0453 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 325 IPR000571 GO:0046872
Ssu2g0453 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 1 17 IPR000571 GO:0046872
Ssu2g0453 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 251 274 IPR000571 GO:0046872
Ssu2g0453 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 88 112 IPR000571 GO:0046872
Ssu2g0453 356 SUPERFAMILY CCCH zinc finger 302 325 IPR036855 GO:0046872
Ssu2g0453 356 ProSiteProfiles Zinc finger C3H1-type profile. 162 190 IPR000571 GO:0046872
Ssu2g0453 356 ProSiteProfiles Zinc finger C3H1-type profile. 85 113 IPR000571 GO:0046872
Ssu2g0453 356 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 1 339 - -
Ssu2g0453 356 Gene3D - 83 199 - -
Ssu2g0453 356 ProSiteProfiles Zinc finger C3H1-type profile. 298 326 IPR000571 GO:0046872
Ssu2g0453 356 ProSiteProfiles Zinc finger C3H1-type profile. 1 19 IPR000571 GO:0046872
Ssu2g0453 356 Gene3D - 1 81 - -
Ssu2g0453 356 Gene3D - 246 341 - -
Ssu2g0453 356 SUPERFAMILY CCCH zinc finger 89 113 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0453 Ssu-Chr2 26342585 26350195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0453 296 349 C2H2 Transcription Factor Family AT3G02830 41.818 4.65e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu2g0453 zf-CCCH 1e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0453 - - gmx:100793976 680.633