Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0411 ATGCGTTGCCAAGACCATCAAAACGACAACGCTACTACTCCACCGATGCCGGAAAACACTGCTAAGAGGCCCAAACTTCTTTCTTCAGTCGGCAATGAATCCCCTTCATTGCCGGTCTTACCAGAGGAACTAATCTTGGGGATCCTGCTTAGGGTTCCTGTGAGATCCCTTCTGCGATTCAGGTGCGTTTGCAAATCATGGAAAACCCTAATCTCCGATCCCCAATTCGCCAAGGACCACCTTCGTACCTCAACCGCCGATCCCAACATGACCCACCAACGATTGTTATCTCCCATCGCATTTAACCCCTTCAAAATCGTGTCTTTCACCGCGCAGTCGCTGTTCCAAAATCCATCAACCCCTGCTAAAGCACGTTGCTTCAGGATGAGACGCTGGAACCAACTTCTAGGTTCTTGCGATGGCTTACTGTGTATGTTTGATGTTTATAAAGGTGGTGTCAGATTGTGGAACCCTTCTACCAGATTGAAATCCAAAAGATTGTCAATCAGTGGTAGTTCTAACGTGTTGATTACTTACCGTGGTTTTGGCTATGATCACGTGAATGACAAGTACAAGTTGCTAGTAGTTCTGGAAGATCTTGGTCAAAGTCAAACTGTGACCAAAATATGTACCTTTGGTGCAAATTCCTGGACAGTGCTTCAGAATTTCCCGTGTCAACCCACTGGGTGGCCAGGAAGATTTGTGAGTGGCACTCTTAATTGGATAGCTAAGAGAGGGGCAAGTGATGATCAATGGGTGATTCTTTCCCTTGATTTGGGGACGGAAACATATGGTGAGGTGTTGCTGCCTAATGGGGACGGTCACAAGATTTGCAATCCTGTACTAGGTGTCTTGCATAACTGTCTTAGTGTTTGTTTCTTTGACTCTGAGAAAGCTCATTGGGCTGTGTGGCTGATGAAGGAGTATGGAGTTCAAGAATCTTGGACTAAATTAACGACAATCCCTCACGTCGTTGAAGATATTGAGACTGAATTGGTGATGATCCCTGAAGATCAGCGTGGGATTTGTAAATGGAACCACTCACTTGACCCCTTGTGCATTTCAGAAGATGGTGTTGTTCTTGTCAGAGCTAACTCTTCCAAACTAGTTCTGTATAACTCGAATGATGGGTATGATAGATTTGATGATGAGGATATGTTTGAGAGCTTACTAACTAAAGCTTACGGTGAAACCTCTTCTCTTGCACTAGAAATCTTTGCATGCATTGTTGGTCCAAGTAAAGCTAGGTATTATTTAGATGAAACTGTGGATGTGATGAGGTTACTTTAA 1290 0.4426 MRCQDHQNDNATTPPMPENTAKRPKLLSSVGNESPSLPVLPEELILGILLRVPVRSLLRFRCVCKSWKTLISDPQFAKDHLRTSTADPNMTHQRLLSPIAFNPFKIVSFTAQSLFQNPSTPAKARCFRMRRWNQLLGSCDGLLCMFDVYKGGVRLWNPSTRLKSKRLSISGSSNVLITYRGFGYDHVNDKYKLLVVLEDLGQSQTVTKICTFGANSWTVLQNFPCQPTGWPGRFVSGTLNWIAKRGASDDQWVILSLDLGTETYGEVLLPNGDGHKICNPVLGVLHNCLSVCFFDSEKAHWAVWLMKEYGVQESWTKLTTIPHVVEDIETELVMIPEDQRGICKWNHSLDPLCISEDGVVLVRANSSKLVLYNSNDGYDRFDDEDMFESLLTKAYGETSSLALEIFACIVGPSKARYYLDETVDVMRLL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0411 429 PANTHER PROTEIN, PUTATIVE-RELATED 37 381 - -
Ssu2g0411 429 Pfam F-box associated 235 322 IPR006527 -
Ssu2g0411 429 ProSiteProfiles F-box domain profile. 34 80 IPR001810 GO:0005515
Ssu2g0411 429 MobiDBLite consensus disorder prediction 1 17 - -
Ssu2g0411 429 TIGRFAM F_box_assoc_1: F-box protein interaction domain 138 333 IPR017451 -
Ssu2g0411 429 Gene3D - 34 93 - -
Ssu2g0411 429 PANTHER OS02G0783600 PROTEIN 37 381 - -
Ssu2g0411 429 SMART fbox_2 40 80 IPR001810 GO:0005515
Ssu2g0411 429 MobiDBLite consensus disorder prediction 1 34 - -
Ssu2g0411 429 Pfam F-box domain 40 75 IPR001810 GO:0005515
Ssu2g0411 429 SUPERFAMILY F-box domain 34 159 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0411 Ssu-Chr2 24453698 24459845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0411 377 429 Trehalose Biosynthesis Gene Families AT1G60140 54.545 2.69e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0411 - - ccaj:109813127 388.652