Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0406 ATGGACCCGAAAACCCCATATGAGAATTCTTCCAATTTTGAATCTTTCATGTTCAATTCACCATCACGTAGAAGTGCCATGTCCATTCAGTCTACGAGTTCTGGTAGGAACAACTCCGCCCGGGAAGTGAGTTTTGGCCACTCAGGATCCAAGCCTGTGAGGTATGGGTCAAAGGGTGCTGATTCTGAAGCTCTCAGCATGTCGCAGAAGGAAATCAGTGATGAGGATGCACGGTTGGTTTATGTTGATGATCCTGAGAGGACAAATGAAAGGCTTGAATTTGCCGGGAATTCAATTCGAACTGCGAAGTACTCCATCTTCACCTTTCTTCCAAGGAATTTGTTTGAACAGTTTCATAGAGTTGCTTATATTTACTTCCTTGTAATTGCCATTCTTAATCAGCTCCCTCAGTTGGCTGTTTTTGGGAGGGGTGTTTCCATTTTGCCATTGGCCTTTGTGCTTCTTGTCACTGCTGTGAAGGATGCATATGAGGACTGGAGGAGGCACAGGTCAGACAAAATTGAGAACAATAGGTTAGCATTGGTATTGGTTAATGGTCAGTTTCAAGAGAAGAAGTGGAAGGATGTTAGAGTTGGGGAGGTCATTAAAATCAGTGCAAATGAAGCCATTCCTTGTGATATTGTGTTGCTCTCAACAAGTGACCCTACTGGGGTTGCTTATGTGCAGACTCTTAATCTGGATGGAGAGTCTAATTTGAAGAGTAGGTATGCAAAGCAAGAGACTCAATATAAGTTGCCTGAAAAGGAGAGGTTGAATGGGTTGATTAAGTGTGAAAAGCCCAATAGGAATATATATGGGTTTCAGGGGAATATGGAAGTTGATGGAAAGAAGTTGTCTCTTGGTTCCTCCAACATTGTCCTTAGAGGCTGTGAGCTCAAGAATACTAATTGGGCACTTGGTGTTGCCGTGTATTGTGGCCGCGAGACCAAAGCTATGCTCAACAACTCAGGAGCTCCATCTAAAAGGAGCCTTCTTGAGACTCGCATGAACTCTGAGATCATcatgctttctttctttcttgtagCTTTGTGTACAGTCACCTCAGTCTGTGCTGCTGTTTGGTTGAAGCGCCACAAGGATGAGTTGAATCTCTTGCCATATTATAGGAAACTAGATGTTTCAGAGGGGGAAGAGGAAAACTATGAGTATTATGGATGGGGTTTGGAAATCCTTTTCactttcctcatgtcagttatAGTGTACCAGGTCATGATCCCTATATCCTTGTACATTTCCATGGAGCTTGTTCGGGTTGGTCAGGCATACTTCATGATCGGAGACTCTAGAATGTATGATAAGGCAACAAATTCAAGATTTCAGTGCAGGGCTTTGAATATTAATGAAGATTTAGGccaaattaaatatgtcttttCTGACAAAACTGGCACGCTGACTGAGAACAAGATGGAGTTTCAATGCGCAAGCATCTTGGGGTTTGATTACAGTTCTGCAAAATCCAGTCTTGAGAATGAGCAAGTTGAATACTCTGTTCAAGTGGATGGAAAGGTCTTTAAACCAAAGATGATGGTGAAAGTTAATCAAGAGCTTTTGCAATTATCAAAAAGTGGATTTGCAAATGAAGAGGGAAAACAGATTTATGATTTCTTTCTAGCATTGGCAGCCTGCAATACCATTGTGCCTCTTGTTGTTGACACATCTGACCCTATGGTCAAGCAGATAGATTACCAAGGGGAATCACCAGATGAACAAGCATTGGCTTATGCTGCTGCTGCCTATGGTTTTACGCTTATTGAACGAACCTCAGGTCACATAGTCATTGATATTCATGGAGAAATGCAAAGGTTCAATGTCTTGGGTTTGCATGAATTTGATAGTGATCGGAAGAGGATGTCGGTTATATTAGGTGTGATAGACAAATCATTGAACACAGACATACTACAAGCAACTGaaacccatcttcactcttaTTCCTCTGTGGGTTTGAGGACACTTGTTATTGGGATGCGGGACTTGAATGCTTCAGAATTTGAGCAATGGCACTCTGCCTTTGAGGCAGCAAGTACTGCTCTGATTGGTAGGGGTGCTATGCTTCGCAAGGTTGCTATCAATGTAGAGAACAATCTCTGCATATTGGGTGCAACTGCTATTGAAGATAAACTGCAGCAAGGCGTGCCGGAATCTATTGAGTCTCTAAGGACTGCAGGTATTAAAGTATGGGTGTTAACTGGGGATAAACAGGAAACAGCCATATCAATTGGATACTCCTCGAAGCTCCTAACGAGCAACATgactcaaattataattaataccaACAATATAGAGTCATGTAGAAGACGTTTACGAGATGCCCATGTCATGTCTAGAGAACAGATGGCTGTGCCTGGGGTTACTCACAATTCTGAAGGAAGTTTAGATGCTGTTACAACTCCATTAGCCTTGATTATTGATGGTAGCAGCcttgtttttattcttgataACAATGAGCTTGAAGAAAAGCTCTTTCAACTTGCGAGTAGATGTTCTGTTGTTCTCTGTTGTCGAGTGGCTCCGCTTCAGAAGGCTGGGATTGTTGCTCTTGTGAAGAATAGAACGGATGACATGACACTCGCCATTGGAGATGGTGCTAATGACGTATCGATGATCCAAATGGCTGATGTTGGAGTTGGAATCAGTGGACAGGAGGGTCGGCAAGCTGTAATGGCTTCAGATTTTGCGATGGGGCAGTTTAGGTTTTTAGTTCCTCTCTTATTGATACATGGGCATTGGAATTACCAACGACTAGGTTACATGATAATATACAACTTCTACAGAAATGCTATCCTTGTTCTAGTCCTATTTTGGTATGTGCTCTTTACTGCCTTCACTTTGACAACTGCAATAAATGAATGGAGCAGCATGTTATATTCAATAATCTACACTGCATTGCCAACTATTGTTGTTGGTATTCTTGACAAGGATCTTAGTAAAAGGACACTCCTAAAGTATCCTCAGCTTTATGGGGTCGGGCTGAAACATGAGGCctacaacaaaaaattgttttggtgGACAATGGCCGATACTTTGTGGCAAAGCATTGCTGTCTTCTTTGCTCCCCTCATTGCATATTGGGGAACCACTGTAGATGTAGCAAGCATAGGAGATCTTTGGACTCTTTCAGTGGTTATTTTGGTTAATTTGCACTTGGCCATGGATGTCATCAGGTGGAATTGGATTACTCATGCAGCCATTTGGGGCTCTATCGTTGCAACTTTCATCTGTGTCATGATTATTGACGCTATACCGGCATTTCCTGGTTACTGGGCTATCTTTCATGCTGCAGGCACTGGATTGTTCTGGTTATGTTTGCTCGGAATTGTGATAGCCGCGTTACTCCCACGATtagttgtaaaatatatttatcagtATTATTTTCCAAGTGACATTCAGATTTCAAGAGAAGCTGAGAAGTTTGGGAATCCAAGAGACAATGGAGGTGGACAGATAGAAATGCTTCCTGTTTCAGATGGTCCACCAAGATAA 3501 0.407 MDPKTPYENSSNFESFMFNSPSRRSAMSIQSTSSGRNNSAREVSFGHSGSKPVRYGSKGADSEALSMSQKEISDEDARLVYVDDPERTNERLEFAGNSIRTAKYSIFTFLPRNLFEQFHRVAYIYFLVIAILNQLPQLAVFGRGVSILPLAFVLLVTAVKDAYEDWRRHRSDKIENNRLALVLVNGQFQEKKWKDVRVGEVIKISANEAIPCDIVLLSTSDPTGVAYVQTLNLDGESNLKSRYAKQETQYKLPEKERLNGLIKCEKPNRNIYGFQGNMEVDGKKLSLGSSNIVLRGCELKNTNWALGVAVYCGRETKAMLNNSGAPSKRSLLETRMNSEIIMLSFFLVALCTVTSVCAAVWLKRHKDELNLLPYYRKLDVSEGEEENYEYYGWGLEILFTFLMSVIVYQVMIPISLYISMELVRVGQAYFMIGDSRMYDKATNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASILGFDYSSAKSSLENEQVEYSVQVDGKVFKPKMMVKVNQELLQLSKSGFANEEGKQIYDFFLALAACNTIVPLVVDTSDPMVKQIDYQGESPDEQALAYAAAAYGFTLIERTSGHIVIDIHGEMQRFNVLGLHEFDSDRKRMSVILGVIDKSLNTDILQATETHLHSYSSVGLRTLVIGMRDLNASEFEQWHSAFEAASTALIGRGAMLRKVAINVENNLCILGATAIEDKLQQGVPESIESLRTAGIKVWVLTGDKQETAISIGYSSKLLTSNMTQIIINTNNIESCRRRLRDAHVMSREQMAVPGVTHNSEGSLDAVTTPLALIIDGSSLVFILDNNELEEKLFQLASRCSVVLCCRVAPLQKAGIVALVKNRTDDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLLIHGHWNYQRLGYMIIYNFYRNAILVLVLFWYVLFTAFTLTTAINEWSSMLYSIIYTALPTIVVGILDKDLSKRTLLKYPQLYGVGLKHEAYNKKLFWWTMADTLWQSIAVFFAPLIAYWGTTVDVASIGDLWTLSVVILVNLHLAMDVIRWNWITHAAIWGSIVATFICVMIIDAIPAFPGYWAIFHAAGTGLFWLCLLGIVIAALLPRLVVKYIYQYYFPSDIQISREAEKFGNPRDNGGGQIEMLPVSDGPPR 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0406 1166 Gene3D - 151 321 - -
Ssu2g0406 1166 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 470 717 IPR023299 GO:0000166
Ssu2g0406 1166 MobiDBLite consensus disorder prediction 1145 1166 - -
Ssu2g0406 1166 Pfam Phospholipid-translocating P-type ATPase C-terminal 893 1133 IPR032630 -
Ssu2g0406 1166 Gene3D - 701 905 IPR023214 -
Ssu2g0406 1166 CDD P-type_ATPase_APLT_Dnf-like 96 1025 - -
Ssu2g0406 1166 SFLD p-type atpase 448 916 IPR044492 -
Ssu2g0406 1166 SUPERFAMILY HAD-like 451 906 IPR036412 -
Ssu2g0406 1166 MobiDBLite consensus disorder prediction 1 45 - -
Ssu2g0406 1166 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 11 1166 - -
Ssu2g0406 1166 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 11 1166 - -
Ssu2g0406 1166 Gene3D - 487 634 IPR023299 GO:0000166
Ssu2g0406 1166 PRINTS P-type cation-transporting ATPase superfamily signature 865 884 - -
Ssu2g0406 1166 PRINTS P-type cation-transporting ATPase superfamily signature 464 478 - -
Ssu2g0406 1166 MobiDBLite consensus disorder prediction 1 59 - -
Ssu2g0406 1166 Pfam Phospholipid-translocating ATPase N-terminal 80 145 IPR032631 -
Ssu2g0406 1166 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 94 1140 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Ssu2g0406 1166 SUPERFAMILY Calcium ATPase, transmembrane domain M 90 1132 IPR023298 -
Ssu2g0406 1166 SFLD Haloacid Dehalogenase 448 916 - -
Ssu2g0406 1166 SUPERFAMILY Calcium ATPase, transduction domain A 177 318 IPR008250 -
Ssu2g0406 1166 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 396 485 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu2g0406 1166 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 836 951 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu2g0406 1166 Pfam E1-E2 ATPase 180 419 - -
Ssu2g0406 1166 ProSitePatterns E1-E2 ATPases phosphorylation site. 466 472 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0406 Ssu-Chr2 24295220 24300600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0406 21 1166 Primary Pumps ATPases AT5G04930 68.927 0.0 1697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0406 K14802 - gmx:100784988 2085.07