LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g0399	ATGGCACTTCGCTTCCCCAATTTAGATTTCAAGTCTTTACCCTTTGCTCAGAACCTCAACCCTGAATTGCTAGGTGTCGTAGTTGCTCTTGTCGCCGTTGGCTTTACGGCGGCTTATATTTACTATCGCACAAAAAACCCCAAAGGAAGCTTGGACcccaaaaatttcaaagaatttaaacTCATAAAGAAGACTCAGCTCAGCCACAACGTTGCAAGATTCAGATTTGCCCTTCCTACTCCTTCTTCGGTATTGGGCCTTCCGGTTGGAAAATACATTTTTGCTAGCAGGGGGAAAGATAGCCAAGGTGAGGAAGTTGTGAGACCATACACTCCAATCACGTTGAATTCAGATATTGGCTATTTCGAGTTGGTTGTGAAGATGTACACAAATGGAAAGATGTCCCACCATTTTAGACAAATGAAGGAAGGTGATTACTTGGCCGTGAAGGGCCCCAAGGGACGTTTCAGCTACAAACCTGGCCAATTTAGGGCAATTGGAATGCTTGCTGGAGGCTCAGGCATAACTCCAATGTTTCAGCTCATAAGAGCCATTCTAGAAAACCCGAAGGACAAAACAAAGGCGCACCTCATTTACGCCAATGTAACAGTAGACGACATTCTGTTAAAGGAAGAACTAGATAACTTCGCGAACAAATTTCCTCACAGATTTGAAGTCTATTATGTTCTTAATGAGCCTCCTGATCAATGGAATGGTGGCATTGGGTTTGTATCGAAGGAGATAATTAAATCACATTGTCCTGAACCAGCCCCAGATATTCAGATACTTAGGTGCGGTCCACCACCTATGAATAAAGCCATGGGTGCTCACCTTGACGCACTTGGCTACACATCAAACATGCAGTTCGAGTTCTAA	876	0.4304	MALRFPNLDFKSLPFAQNLNPELLGVVVALVAVGFTAAYIYYRTKNPKGSLDPKNFKEFKLIKKTQLSHNVARFRFALPTPSSVLGLPVGKYIFASRGKDSQGEEVVRPYTPITLNSDIGYFELVVKMYTNGKMSHHFRQMKEGDYLAVKGPKGRFSYKPGQFRAIGMLAGGSGITPMFQLIRAILENPKDKTKAHLIYANVTVDDILLKEELDNFANKFPHRFEVYYVLNEPPDQWNGGIGFVSKEIIKSHCPEPAPDIQILRCGPPPMNKAMGAHLDALGYTSNMQFEF	291

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu2g0399	291	Gene3D	Translation factors	49	147	-	-
	Ssu2g0399	291	PRINTS	Cytochrome B5 reductase signature	167	186	-	-
	Ssu2g0399	291	PRINTS	Cytochrome B5 reductase signature	108	115	-	-
	Ssu2g0399	291	PRINTS	Cytochrome B5 reductase signature	205	216	-	-
	Ssu2g0399	291	PRINTS	Cytochrome B5 reductase signature	261	269	-	-
	Ssu2g0399	291	PRINTS	Cytochrome B5 reductase signature	85	96	-	-
	Ssu2g0399	291	PRINTS	Cytochrome B5 reductase signature	144	158	-	-
	Ssu2g0399	291	SUPERFAMILY	Riboflavin synthase domain-like	48	160	IPR017938	-
	Ssu2g0399	291	PANTHER	NADH-CYTOCHROME B5 REDUCTASE	2	291	IPR001834	GO:0016491
	Ssu2g0399	291	Pfam	Oxidoreductase NAD-binding domain	168	273	IPR001433	GO:0016491
	Ssu2g0399	291	PRINTS	Flavoprotein pyridine nucleotide cytochrome reductase signature	261	269	IPR001709	GO:0016491
	Ssu2g0399	291	PRINTS	Flavoprotein pyridine nucleotide cytochrome reductase signature	167	186	IPR001709	GO:0016491
	Ssu2g0399	291	PRINTS	Flavoprotein pyridine nucleotide cytochrome reductase signature	205	216	IPR001709	GO:0016491
	Ssu2g0399	291	ProSiteProfiles	Ferredoxin reductase-type FAD binding domain profile.	54	159	IPR017927	GO:0016491
	Ssu2g0399	291	CDD	cyt_b5_reduct_like	59	291	-	-
	Ssu2g0399	291	Pfam	Oxidoreductase FAD-binding domain	59	158	IPR008333	-
	Ssu2g0399	291	Gene3D	-	148	291	IPR039261	-
	Ssu2g0399	291	SUPERFAMILY	Ferredoxin reductase-like, C-terminal NADP-linked domain	147	286	IPR039261	-
	Ssu2g0399	291	PANTHER	NADH-CYTOCHROME B5 REDUCTASE	2	291	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g0399	Ssu-Chr2	23911973	23919928	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g0399	39	291	NADPH P450 reductases	AT5G17770	69.170	4.42e-137	387

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g0399	K00326		-	gmx:100809584	531.561