Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0387 ATGGGTGAGAAATGGGAGGGAGAGAGACAAGTACGACGGCCTTGCGAATCTGAAAACCTAATTGCAGCACTTCGCTACAGCCCTCACGCGTCTCCGTCAAACTTCTCCGACGTGTTCGATGACGCGCTCGAATCCGCCATCAGACAGAAAAACTTCAAACTCAACGTCACCGGCGTCCTTGACGACGTGACGCTCCGGCAGATCATCCTGTCGCGAAGtgacggcaacaataatggtggtggcggtggtaatgtcGACGGTGACGGTGTCGATAGCGGTGGTTATGGCGGTACCAGTGGTGATCATGGCGGTGCccgtggtgatggtggtggcggagtcggtggtggtggtaaccgtgcctgtggtggtggtagcaacgctggtggtggtagtggtggtgacgatgatagtagtgatgaagcttgtggtggtggaggcgatgtcGGTAGTCATGGTAGTTGTgacagcggtgatggtggtagcggtgctggtggtcgtggtggtgatagtggtggtggtgacggtggctgcAGAGATGGtggcagcagtagtggtggcggtaACAGTGGTAGTGACATGGCGGTGGTTGTTGTGGTGGTAGTGGCGAGAAAgGAAGCACTGGTAACAACCAACCTGATTTCTTTGACTGTGCTATATCTATTCCCAGCCCTTGGGAACTCAAGAGCCCTAAGGAGGTTAAGAACTGCATGTGAGAAGGCAAAAAGGACACTCTCTTATGCTGTTACTACCAACATTGAGATAGATGCTTTATTTCAGGGCATAGACTTCTGCTCTTCAATCACCCGTGCAAGGTTTGAGGAAATCAATATGGAGCTCTTTGAAGAGTGTATGGAGACAGTAGATAGGTGTCTTACTGATGCTAAGATGGACAAGGGTAGTGTGCATGATGTTGTCCTTGTTGGTGGTTCTTCTAGGATTCCCAAAGTGCAGCAGCTATTGCAGGACTTCTTCAAGGGGAAGGATTTGTGCAAGAGCATCAACCCTGACGAGGCTGTTGCTTATGGTGCAGCTGTACAGGCTGCTTTGTTGAGTGAAGACATTAAGAATGTTCCAAACTTGGTTCTGTTGGATGTTACACCTCTGTCACTTGGTATATTGGTCAAGGGAGATATCATGAGTGTTGTGATTCCTAGGAACACTACCATTCCCGTGAGGAAGACACAAGTATACCGTACACCAGAAGATAACACGTCCAGTGTCGATATTAGTGTTTATGAGGGTGAGAGAACTAGAGCCAGTGATAACAATTTGCTGGGCTTTTTTAGTCTTTCTGGTTTCCCTCAAGCTCCTCGTGGCCATCCCTTGGATGTGTGCTTTACCATTGATGAAAATGGTATCCTATCTGTTTCTGCTGAGGAGAAAACCACTGGCAATAAGAACCAGATTACCATAACCAATGACAAAGAAAGACTGTCAAccatagaaattaaaagaatgatTCAAGAAGCTGAGCATTTCCAGGATGAAGATAGGAAGTTTCTCAGAAAGGCCAAAGCAATGAATGCTTTGGATGGTTACGTTTACAAGATGAAGAATGCTTTGAAGAACAATTATATCAGTTCTAAGCTTTGCTCACAAGAAAGGGAGAAGATCAGTTCTGCAATGACTAAAGCCACATATTTGCTTGACAATGATAACCAGCTGGTTGAAATACAGGTGTTTGAGGATTATTTGGAGGAGCTTGTGGGCCTCTTTGAACACAACATTGGGAAGATTGGTTAG 1743 0.3821 MGEKWEGERQVRRPCESENLIAALRYSPHASPSNFSDVFDDALESAIRQKNFKLNVTGVLDDVTLRQIILSRSDGNNNGGGGGNVDGDGVDSGGYGGTSGDHGGARGDGGGGVGGGGNRACGGGSNAGGGSGGDDDSSDEACGGGGDVGSHGSCDSGDGGSGAGGRGGDSGGGDGGCRDGGSSSGGGNSGSDMAVVVVVVVARKEALVTTNLISLTVLYLFPALGNSRALRRLRTACEKAKRTLSYAVTTNIEIDALFQGIDFCSSITRARFEEINMELFEECMETVDRCLTDAKMDKGSVHDVVLVGGSSRIPKVQQLLQDFFKGKDLCKSINPDEAVAYGAAVQAALLSEDIKNVPNLVLLDVTPLSLGILVKGDIMSVVIPRNTTIPVRKTQVYRTPEDNTSSVDISVYEGERTRASDNNLLGFFSLSGFPQAPRGHPLDVCFTIDENGILSVSAEEKTTGNKNQITITNDKERLSTIEIKRMIQEAEHFQDEDRKFLRKAKAMNALDGYVYKMKNALKNNYISSKLCSQEREKISSAMTKATYLLDNDNQLVEIQVFEDYLEELVGLFEHNIGKIG 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0387 580 MobiDBLite consensus disorder prediction 126 188 - -
Ssu2g0387 580 Pfam Hsp70 protein 226 562 IPR013126 GO:0005524|GO:0140662
Ssu2g0387 580 MobiDBLite consensus disorder prediction 72 111 - -
Ssu2g0387 580 PRINTS 70kDa heat shock protein signature 359 378 - -
Ssu2g0387 580 PRINTS 70kDa heat shock protein signature 333 353 - -
Ssu2g0387 580 PRINTS 70kDa heat shock protein signature 439 455 - -
Ssu2g0387 580 PRINTS 70kDa heat shock protein signature 301 317 - -
Ssu2g0387 580 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 356 511 IPR029047 -
Ssu2g0387 580 PANTHER HEAT SHOCK PROTEIN 70KDA 225 578 IPR013126 GO:0005524|GO:0140662
Ssu2g0387 580 PANTHER HEAT SHOCK 70 KDA PROTEIN 225 578 - -
Ssu2g0387 580 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 355 507 IPR029047 -
Ssu2g0387 580 ProSitePatterns Heat shock hsp70 proteins family signature 3. 304 318 IPR018181 -
Ssu2g0387 580 Gene3D - 248 335 - -
Ssu2g0387 580 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 506 572 IPR029048 -
Ssu2g0387 580 Gene3D - 508 579 IPR029048 -
Ssu2g0387 580 SUPERFAMILY Actin-like ATPase domain 224 351 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0387 Ssu-Chr2 23432163 23438233 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0387 225 579 Calmodulin-binding Proteins AT3G12580 63.025 1.53e-150 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0387 K03283 - gmx:102667578 535.028