Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0384 ATGAAGAGGTCTCCAGCATCTTCTTGTTCATCATCATCTTCCTCTGTTGGGTTTGAAACTCCCATTCAGTCAGAGAAAAGAAGGCCTAAGCATCCAAGAAGGAATTTGAAGTCACAAAAATGCAAGCAGGACCAAACCACTGGCAGAAGAAGCTCTATCTATAGAGGAGTTACCAGGCATAGGTGGACAGGGAGGTTTGAAGCTCACCTATGGGACAAGAGCTCTTGGAACAACATTCAGAGCAAGAAGGGACGACAGGTTTATTTGGGGGCATATGATACTGAAGAAGCTGCGGCCCGTACCTATGATCTTGCAGCCCTTAAGTACTGGGGGAAGGATGCAACCTTGAATTTCCcgATAGAAACTTATACAAAGGACCTTGAGGAAATGGACAAGGTCTCGAAAGCAGAATATTTGGCTTCTTTGCGGCGGCAAAGCAGTGGTTTTTCTAGAGGCATCTCTAAGTATCGTGGGGTTGCTAGGCATCATCATAATGGGCGCTGGGAGGCACGCATTGGAAGAGTATGCGGAAACAAGTACCTCTACTTGGGAACATTTAAAACACAAGAGGAGGCAGCTGTGGCATATGACATGGCAGCAATAGAGTACCGAGGACTCAATGCAGTGACCAATTTTGACATAAGCAACTACGTGgacaaaataaagaagaaaactgACCAAACCCAACAAACAGAAGCTCAGACAGAAACAGCTCCTAACTCCTCTGACTCTGAAGAAGCAGAAGTAGAACAACAGACAACTACTACATGCCCCATCTGA 780 0.4462 MKRSPASSCSSSSSSVGFETPIQSEKRRPKHPRRNLKSQKCKQDQTTGRRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQSKKGRQVYLGAYDTEEAAARTYDLAALKYWGKDATLNFPIETYTKDLEEMDKVSKAEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTFKTQEEAAVAYDMAAIEYRGLNAVTNFDISNYVDKIKKKTDQTQQTEAQTETAPNSSDSEEAEVEQQTTTTCPI 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0384 259 MobiDBLite consensus disorder prediction 230 259 - -
Ssu2g0384 259 SUPERFAMILY DNA-binding domain 154 215 IPR016177 GO:0003677
Ssu2g0384 259 Pfam AP2 domain 154 205 IPR001471 GO:0003700|GO:0006355
Ssu2g0384 259 Pfam AP2 domain 53 111 IPR001471 GO:0003700|GO:0006355
Ssu2g0384 259 Gene3D AP2/ERF domain 53 121 IPR036955 GO:0003700|GO:0006355
Ssu2g0384 259 Gene3D AP2/ERF domain 154 215 IPR036955 GO:0003700|GO:0006355
Ssu2g0384 259 MobiDBLite consensus disorder prediction 224 259 - -
Ssu2g0384 259 CDD AP2 154 215 IPR001471 GO:0003700|GO:0006355
Ssu2g0384 259 ProSiteProfiles AP2/ERF domain profile. 53 119 IPR001471 GO:0003700|GO:0006355
Ssu2g0384 259 SUPERFAMILY DNA-binding domain 52 121 IPR016177 GO:0003677
Ssu2g0384 259 MobiDBLite consensus disorder prediction 1 50 - -
Ssu2g0384 259 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Ssu2g0384 259 PRINTS Ethylene responsive element binding protein signature 195 215 IPR001471 GO:0003700|GO:0006355
Ssu2g0384 259 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 1 253 - -
Ssu2g0384 259 SMART rav1_2 155 219 IPR001471 GO:0003700|GO:0006355
Ssu2g0384 259 SMART rav1_2 53 125 IPR001471 GO:0003700|GO:0006355
Ssu2g0384 259 CDD AP2 52 120 IPR001471 GO:0003700|GO:0006355
Ssu2g0384 259 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 253 - -
Ssu2g0384 259 MobiDBLite consensus disorder prediction 1 21 - -
Ssu2g0384 259 ProSiteProfiles AP2/ERF domain profile. 155 213 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0384 Ssu-Chr2 23370998 23375782 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0384 128 230 AP2-EREBP Transcription Factor Family AT5G57390 31.532 1.02e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Ssu2g0384 AP2 2.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0384 - - gmx:100527432 432.95