Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0373 ATGGGGACCCATACTATGGGGGCtcaaggtggtggtggagatAGTAATGGAAAACAGTCACAACTCCAGCCTTTGGTGCGGCAAAACTCAATGTACAGTCTCACACTTGATGAGGTTCAGAATCAATTGGGTGATTTGGGGAAGCCGCTAAGTAGTATGAACCTTGATGAGCTTCTAAAAAATGTGTGGACCGTCGAGGCAGGCCAGTCCCTCAGTATGGACAATGAGGGCACAGCGCAAGCTAGTCAAGCTGCTCTGCAGCGTCAGGCTAGTCTGTCATTAGCCGAGGCACTAAGCAAGAAAACTGTAGATGAGGTTTGGAGAGATAtccaacaaaacaaaatcaatggGGAGAAGAAGTTCCGAGATAGACAGCCTACTTTGGGAGAGATGACATTGGAGGATTTCTTGGTGAAAGCAGGTGTTGTTGCAGAAGCATCTTCTAATAGAAAGAATACCGGTACTATAGCTGGGGTTGATTCAAACATAGCAGCTGTAGCACAGTTTCCTTCGCAAGGACAGTGGATGCAATATCCACAAGCACAATATCAGCATCCACCACAAAGTTTAATGGGGATTTATATGCCTGGCCAGGGTATGGCACAACCATTACACATGGGGGCTGGTGCTTCATTGGATGTTTCATTTGTAGATAGTCAGGTGGCATTGCCATCACCTCTGATGGGAACAGTGTCAGATACGCAGACTCCTGGAAGAAAAAGGAGCACTCCTGAGGACATGATGGAGAGGACTGTTGAGAGGAGACAGAAAAGGATGATAAAAAATCGGGAATCCGCTGCCCGTTCAAGAGCAAGGAAACAGGCATACACAAATGAATTGGAGAATAAAGTCTCACGTCTGGAAGAGGAAAATGAAAGGCTGAGGAAACGAGAGGAGCTAGAGAAGATGTTGCCATGTGCACCACCTCCTGAACCTAAATATCAACTTCGCCGAGTGGCATCAGCTCTATTCTGA 975 0.4492 MGTHTMGAQGGGGDSNGKQSQLQPLVRQNSMYSLTLDEVQNQLGDLGKPLSSMNLDELLKNVWTVEAGQSLSMDNEGTAQASQAALQRQASLSLAEALSKKTVDEVWRDIQQNKINGEKKFRDRQPTLGEMTLEDFLVKAGVVAEASSNRKNTGTIAGVDSNIAAVAQFPSQGQWMQYPQAQYQHPPQSLMGIYMPGQGMAQPLHMGAGASLDVSFVDSQVALPSPLMGTVSDTQTPGRKRSTPEDMMERTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKREELEKMLPCAPPPEPKYQLRRVASALF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0373 324 Pfam bZIP transcription factor 254 302 IPR004827 GO:0003700|GO:0006355
Ssu2g0373 324 MobiDBLite consensus disorder prediction 239 292 - -
Ssu2g0373 324 MobiDBLite consensus disorder prediction 1 24 - -
Ssu2g0373 324 CDD bZIP_plant_BZIP46 254 308 - -
Ssu2g0373 324 Gene3D - 252 305 - -
Ssu2g0373 324 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 20 322 IPR043452 GO:0003700|GO:0045893
Ssu2g0373 324 SMART brlzneu 250 318 IPR004827 GO:0003700|GO:0006355
Ssu2g0373 324 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 252 297 IPR004827 GO:0003700|GO:0006355
Ssu2g0373 324 MobiDBLite consensus disorder prediction 227 292 - -
Ssu2g0373 324 PANTHER ABSCISIC ACID-INSENSITIVE 5-LIKE PROTEIN 2-RELATED 20 322 - -
Ssu2g0373 324 SUPERFAMILY Leucine zipper domain 254 298 IPR046347 GO:0003700|GO:0006355
Ssu2g0373 324 Coils Coil 270 304 - -
Ssu2g0373 324 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 257 272 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0373 Ssu-Chr2 23198638 23202168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0373 18 324 bZIP Transcription Factor Family AT3G56850 56.013 6.61e-99 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu2g0373 bZIP_1 1.3e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0373 K14432 - gmx:100101875 503.442