LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g0351	ATGTCAACCCCACCAATATCctttctattcctccttttcCTCTCCCTCCTTGTACCATTACTCTTAGCTCAAGCTCCATCACAATCTCCAACACATgcccctcctcctcctcctccatcaCCATCTCCATCACACacccctcctcctcctcctcctccatcaCCGTCTCTAAAGCATaaccctcctcctcctccatcaCCATCACCTCCATCACATAcccctcctcctccttctccaTCACCATCTCCATCACATGCCcctccttctcctcctcctccatcaCCATCTCCAAAACATaaccctcctcctcctccatcaCTATCTCCAACACATacccctcctcctcctccttctccaTCATCTCCATCACATACCCCTCCTCCTTCTCCATCATATGCCCCTCCTTCTCCATCACCATCTCCAACACATGCCCCTCCTCCTCCATCACCATCTTCAACAGATGCCCCTCCCCCGCCCCCTCCTCCATCACCATCTCCAACACATGCCCCTCCTCCTTCTTCACCCTCTTCAGCATGCAAGTCCACATTATATCCAAAACTATGTCGCTCCATTCTCTCATCCATTCGTTCCTCACCTTCTGATCCCTACAAGTTGGGCAAATTCTCCATCAAACAAAGCCTCAAACAAGCCAAGAAACTAGCCAAAGTGTTTGATGACTTCCTCCAAAAGCACAAATCCTCTTCTCTCAACAGCGCGGAGATTGCAGCCCTAGAAGACTGCAGTGAGCTCAACCAGCTCAATGTGAACTACCTGTACTCAGTTTCACAAGAGCTTAAGTCTGCAAACTCATCCAGCACAGAGTTGGTAGAAAAAATTGAGACATATCTCAGTGCTGTGGCCACTAACCATTACACTTGCTATGATGGGTTGGTGGCGACCAAGAGCAACATTGCCCATGCTCTTGCGGTGCCTCTCAGCAATGTCACACAACTCTACAGTGTGTCACTTGGGTTGGTCACGCAGGCTCTGAAGAAAAACCTCAAGAAGCATAAGACCAGAAAACATGGTCTTCCCACCACGGATTACAAGGTCAGGCAGCCACTTACGAAGCtcattaagCTTCTTCGCACAAAGTACAGTTGCACAACATCATCCAATTGTACTAGAAGTGAAAGGATTCTTAAAGAAAGCGAGAGCAAAGGAATTCTACTAAAAGAGTTTGCTATTGTGAGCCTTGATGGCACAGCCAACTTCACCTCCATTGGAGAGGCTATTGCCGCTGCACCCGATAATTTAATGCCAGAAGATGGCTATTTTCTTGTCTATGCCAGAGAAGGAAACTATGAGGAATATGTCACTGTTCccattcaaaagaaaaatatcttgCTTATTGGTGATGGTATCAACAAGACTTGCATCACAGGAAACCATAATGTCGTAGATGGTTGGACCACTTTCAATTCTTCAACCTTTGCTGTAGCTGGAGAAAGATTCGTTGCAGTGGATGTTACATTCAGAAACACAGCTGGCCCTCAGAAGCACCAAGCAGTAGCTGTGAGGAACAATGCAGACCTCTCCACCTTCTACCGTTGCAGCTTTGAAGGATACCAAGACACCCTCTATGTTCACTCTCTCAGGCAATTCTATAAGGAATGTGACATTTATGGCACTGTGGATTTCATTTTTGGCAATGCTGCTGTGGTGTTCCAGAGCTGCAACATCTATGCCAGAAAACCATTGCCAAACCAGAAGAATGCTGTCACAGCACAAGGGAGAACTGACCCCAATCAAAACACTGGAATTTCAATACAGAATTGCAGGATTGATGCTGCACCTGACTTGGCTGCTGACTTGAATTCGACTCAAAATTACTTAGGCAGGCCATGGAAAGTGTATTCAAGGACTGTGTACATGCAGTCATATATTGGAGAACTAATTCAATCCGCTGGATGGTTAGAGTGGAACGGCACAGATGGGTTAAACACCCTCTTTTATGGTGAGTATGATAACTATGGACCTGGTGCTGATACCAGCAGGAGGGTACAATGGAGTGGTTACAATCTGTTGAGTGCTACTCAAGCTTGGAACTTTACTGTGCTTAATTTTACCTTGGGGAACACATGGCTTCCGGATACAGATGTACCCTACTCTGAGGGACTATAG	2124	0.4148	MSTPPISFLFLLFLSLLVPLLLAQAPSQSPTHAPPPPPPSPSPSHTPPPPPPPSPSLKHNPPPPPSPSPPSHTPPPPSPSPSPSHAPPSPPPPSPSPKHNPPPPPSLSPTHTPPPPPSPSSPSHTPPPSPSYAPPSPSPSPTHAPPPPSPSSTDAPPPPPPPSPSPTHAPPPSSPSSACKSTLYPKLCRSILSSIRSSPSDPYKLGKFSIKQSLKQAKKLAKVFDDFLQKHKSSSLNSAEIAALEDCSELNQLNVNYLYSVSQELKSANSSSTELVEKIETYLSAVATNHYTCYDGLVATKSNIAHALAVPLSNVTQLYSVSLGLVTQALKKNLKKHKTRKHGLPTTDYKVRQPLTKLIKLLRTKYSCTTSSNCTRSERILKESESKGILLKEFAIVSLDGTANFTSIGEAIAAAPDNLMPEDGYFLVYAREGNYEEYVTVPIQKKNILLIGDGINKTCITGNHNVVDGWTTFNSSTFAVAGERFVAVDVTFRNTAGPQKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYKECDIYGTVDFIFGNAAVVFQSCNIYARKPLPNQKNAVTAQGRTDPNQNTGISIQNCRIDAAPDLAADLNSTQNYLGRPWKVYSRTVYMQSYIGELIQSAGWLEWNGTDGLNTLFYGEYDNYGPGADTSRRVQWSGYNLLSATQAWNFTVLNFTLGNTWLPDTDVPYSEGL	707

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu2g0351	707	PRINTS	Proline rich extensin signature	24	36	-	-
	Ssu2g0351	707	PRINTS	Proline rich extensin signature	38	54	-	-
	Ssu2g0351	707	PRINTS	Proline rich extensin signature	58	70	-	-
	Ssu2g0351	707	PRINTS	Proline rich extensin signature	72	93	-	-
	Ssu2g0351	707	ProSitePatterns	Pectinesterase signature 2.	541	550	IPR033131	-
	Ssu2g0351	707	PANTHER	PECTINESTERASE	170	706	-	-
	Ssu2g0351	707	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	177	328	IPR035513	-
	Ssu2g0351	707	MobiDBLite	consensus disorder prediction	26	180	-	-
	Ssu2g0351	707	Pfam	Plant invertase/pectin methylesterase inhibitor	176	324	IPR006501	GO:0004857
	Ssu2g0351	707	Gene3D	Invertase/pectin methylesterase inhibitor family protein	176	329	IPR035513	-
	Ssu2g0351	707	SUPERFAMILY	Pectin lyase-like	394	706	IPR011050	-
	Ssu2g0351	707	Pfam	Pectinesterase	395	692	IPR000070	GO:0030599\|GO:0042545
	Ssu2g0351	707	Gene3D	-	394	707	IPR012334	-
	Ssu2g0351	707	MobiDBLite	consensus disorder prediction	29	173	-	-
	Ssu2g0351	707	TIGRFAM	PME_inhib: pectinesterase inhibitor domain	176	328	IPR006501	GO:0004857
	Ssu2g0351	707	PANTHER	PECTINESTERASE	170	706	-	-
	Ssu2g0351	707	SMART	PMEI_2	170	325	IPR006501	GO:0004857
	Ssu2g0351	707	CDD	PMEI-like_3	178	327	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g0351	Ssu-Chr2	22452220	22458716	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g0351	178	707	Carbohydrate Esterase	AT3G10720	62.500	0.0	708

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g0351	K01051		-	gmx:100808277	950.273