Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0345 ATGAATCATAGTTGCTTCCCAAATGTTTTCTGGCAGCCAGTCTTGTATGCAGAGAACAATCAATCCTTTCTTCACATTGCATTTTTTGCTCTTAGACACATTCCTCCAATGGCAGAGTTAACATATGATTATGGATGTTCTGGTCATGCTGAGGGTAGCAGTGCACCCAAAGGGAGAAAGAAATGCTTGTGTGGATCATCAAAATGCCGTGGCATGGTGCTGGCAAATGTATACATGGCTAAAAGAGGTTTGGATAATTTGATACTAACAACTTACCAAAGAACTTTTGAACTCAAGAGTAGTGCAACCTCCCGTGGTAATTTCAGTTTCCTCGTTTGTCTTCATAGATCTCGCCTAGACAGCCTGTCTCAACTCCCAAATTGCCGCAGACAAGCCCACCTTGTGCGCCTTTGCCGCATCGAGTCCTACCTCCTCTCCTTCCTCCACCTCCCCGACGATGAAGGGTAG 468 0.453 MNHSCFPNVFWQPVLYAENNQSFLHIAFFALRHIPPMAELTYDYGCSGHAEGSSAPKGRKKCLCGSSKCRGMVLANVYMAKRGLDNLILTTYQRTFELKSSATSRGNFSFLVCLHRSRLDSLSQLPNCRRQAHLVRLCRIESYLLSFLHLPDDEG 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0345 155 Gene3D SET domain 1 73 IPR046341 -
Ssu2g0345 155 Pfam SET domain 1 45 IPR001214 GO:0005515
Ssu2g0345 155 ProSiteProfiles SET domain profile. 1 45 IPR001214 GO:0005515
Ssu2g0345 155 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 1 72 - -
Ssu2g0345 155 ProSiteProfiles Post-SET domain profile. 58 74 IPR003616 -
Ssu2g0345 155 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 1 72 - -
Ssu2g0345 155 SUPERFAMILY SET domain 1 71 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0345 Ssu-Chr2 22115211 22121172 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0345 1 71 Su(var)3-9 homologs AT1G73100 64.384 1.88e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu2g0345 SET 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0345 K24405 - gmx:100800651 151.754