Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0338 ATGGAGGATGTCAATGATCCTAAGAGCAACAAGAGTAAAAGAAGGGTTGCGAAAAAGCTTCAAGTCAATGAAGGGGTGGAGgTGAGGAGTGTAGAGGAGGGCTTTCTAGGATCTTGGCACCCTGGGACGGTTATCAAGTGTGGGAAGCTGAAGCGCCATGTCAGATATAAGAATGTTTTGAAAGATGATGGGTTGGATTATCTTGTGGATGTAGTGAGGGTTTCAAAAGCTTTGGATGGTGACAGTGGACCTTCAAACTGCAATAAGCGCGGGTTCATTAGGCCACTGCCTCCTTTGGTTGAGTTCGAGAGATGGGACCTTAAATTTGGTCTCTGTGTTGATGTGAGCTATCAGGAAGCTTGGTGGGAAGGTGTCATATTCGATCACTGTGATGGAATGGAGAAGAGGAGCGTGTTCTTCCCTGATTTGGGTGATGAAATGCAAGTTGGAATTCATCAATTGCGGATTACTCAGGACTGGGATGAAGTTACAGAGGAGTGGAAGCGACGAGGGAACTGGGTGTTTCTTGAATTGGTTGAGAAGTGCCAGAGGGAATCGTTTGTTGCAGTTTCAGCTAGGCAAATTTGGTATGATGTACAGGTAAAAAAGGAATTTGGCTTGATTGGAGAGTGGACATATAATGTGAAGGACCCCTGCAGAAATATGGTGATGGAGGTAGTTAATGACTACTTAACTCTTACAATAAAAGAACTTTTCTCAGTCCTAAACCTTCCGGGGAgtttattaaatgaaagaccAGAGCAGGAATCAGTTGAACCTATGGCTAATGATGACTTAAATATGACCTTGCCTGATAAGGAAATTGTTGTCCAGAAAGAAACTTCTCCTGCTGTTAAAGAGATCTTACCTGagtttcaaaaagaaattaccCCGGAAGGTGCTCGTGAAGTAGTTTCAGGTGCTAGGTGTTCTAAAAAAAGTAGATCAACTGCAAATCGAAAGCCGAAAAGCTTGAGGGATTCAAAGGCCAACGTACCTAAGTGCAATGGATTGCCTCTACGGGTGCTAAGATCAAATAAGAGGGTGCAAAAGGAGTCTGCTCCTCTTCCGTTACATCGTAAACCTCTAAATGTTTTGTCTTGGTTGATAGACAACCACTTGGTCTCGCCAAAGTCAAAGGTTTATTATAAAGCAAAAGGCAGGCAGTATACAGGGAGAATAACTCACAATGGAATCAAGTGTGACTGTTGTCGGACAATATACAGTTTTGTTGGCTTTGAAAATCATGCTAGTGGCAGTAGTACCTGCAGACCCTCTGCTAGTATCTTTTTGGAAGATGGTAGAACACTCTTAGATTGTCAGATACAAATAATGCAAGACCATAAGACAAGGGAAAGTAATGAAAAACCATTTAGTGATTTGACTCTAAACGAGAATGACTACATTTGTTCTGTTTGCTACTATGGTGGTGAACTTATTTTATGTGATCAATGCCCATCTTCATTTCATCAGATGTGTCTTGATTTGGAGAATATCCCTGATGGTGACTGGTTTTGTCCATCATGTTGTTGCGGGATTTGTGGCCAAAGCaaaattgatgatgaggatggaCATGTCCTTACTTGTGTTCAGTGTGAACATAAATATCACGTTAGGTGCCTTAAAAATGGAGCCGTAGATATATCAATATATCCAGAAAACTGGTTCTGCGGAAAAAACTGTGAAAAGATACATGAGGGCCTTCATCAACTATTAGGAAAGCCAGTTTCAGTGGGTGTGGCCCATCTAACTTGGACATTGTTGAAGTTTATCAAGCCTGACAGTTGTGATCTTGGTAGAATTAAAAGTGACAGCTTATTGGCAGAAAGTCACAGCAAACTCAATCTTGCTCTTTCGCTAATGCATGAATGTTTTGAGCCCCTAAAGGAATCTTTCTCTAGCAGAGATCTGGTGAAAGATGTTATATTCAGCAGAAGGTCAGAGCTTAACCGATTAAATTTCCAGGGTTTCTATACTGTACTACTTGAGAGAAATGAAGAACTTATTAGTGCGGCAACTGTTAGGGTCCATGGGAAGAAGGTAGCAGAAGTACCTCTTGTTGGTACCAGATTACAGTATCGTCGAAATGGAATGTGTCACGTTTTAATGAATGAGCTTGAAAAGAAGCTCATGCAATTAGGTGTGGAGAGGCTTGTCTTGCCTGCTGTTCCTAGTGTGCTAGAAACGTGGACTGGCTCTTTTGGCTTTGCAAAGATGACTAATTTTGAGAGATCTCAATTTCTGGACTATACTTTCCTAGATTTTCAGGATACCACCATGTGCCAGAAGCTGTTGATGAAGATTCCATCTCCAGATTCAGGTTTGTTAATAGCTGATTTTCAGGAGTCACAACAAAGATGTGATGTTTTCTCTGGAAGTTGTGTTAACTTCAATAAGCCTAGTCCAGTATCTGAAGTATCCAAAGTAGAAGAGATTGATAAAGGAGGGATGCTAATGGGGGATACTTGTGCAGGCAACAATGATCATCATGTTATTGGTGCTTTAGACCCAGTCACCATGGTGGAGCAACCAAGTCCTAGGGATCAACAGTGCCAGAACGGAACCAGCTCACAGTGCTTTCTTGAAAAACAAGCTTACAGGTACAATGGCCCGTATAAGTACCACTACACACGAAGGAAAGTGAAAAAGTCATGTGAAGGATTTGGCATGCCATTATGA 2679 0.4095 MEDVNDPKSNKSKRRVAKKLQVNEGVEVRSVEEGFLGSWHPGTVIKCGKLKRHVRYKNVLKDDGLDYLVDVVRVSKALDGDSGPSNCNKRGFIRPLPPLVEFERWDLKFGLCVDVSYQEAWWEGVIFDHCDGMEKRSVFFPDLGDEMQVGIHQLRITQDWDEVTEEWKRRGNWVFLELVEKCQRESFVAVSARQIWYDVQVKKEFGLIGEWTYNVKDPCRNMVMEVVNDYLTLTIKELFSVLNLPGSLLNERPEQESVEPMANDDLNMTLPDKEIVVQKETSPAVKEILPEFQKEITPEGAREVVSGARCSKKSRSTANRKPKSLRDSKANVPKCNGLPLRVLRSNKRVQKESAPLPLHRKPLNVLSWLIDNHLVSPKSKVYYKAKGRQYTGRITHNGIKCDCCRTIYSFVGFENHASGSSTCRPSASIFLEDGRTLLDCQIQIMQDHKTRESNEKPFSDLTLNENDYICSVCYYGGELILCDQCPSSFHQMCLDLENIPDGDWFCPSCCCGICGQSKIDDEDGHVLTCVQCEHKYHVRCLKNGAVDISIYPENWFCGKNCEKIHEGLHQLLGKPVSVGVAHLTWTLLKFIKPDSCDLGRIKSDSLLAESHSKLNLALSLMHECFEPLKESFSSRDLVKDVIFSRRSELNRLNFQGFYTVLLERNEELISAATVRVHGKKVAEVPLVGTRLQYRRNGMCHVLMNELEKKLMQLGVERLVLPAVPSVLETWTGSFGFAKMTNFERSQFLDYTFLDFQDTTMCQKLLMKIPSPDSGLLIADFQESQQRCDVFSGSCVNFNKPSPVSEVSKVEEIDKGGMLMGDTCAGNNDHHVIGALDPVTMVEQPSPRDQQCQNGTSSQCFLEKQAYRYNGPYKYHYTRRKVKKSCEGFGMPL 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0338 892 MobiDBLite consensus disorder prediction 303 330 - -
Ssu2g0338 892 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 511 564 IPR013083 -
Ssu2g0338 892 SMART agenet_At_2 18 80 IPR014002 -
Ssu2g0338 892 SMART agenet_At_2 105 162 IPR014002 -
Ssu2g0338 892 CDD NAT_SF 660 720 - -
Ssu2g0338 892 SMART PHD_3 511 561 IPR001965 -
Ssu2g0338 892 SMART PHD_3 469 510 IPR001965 -
Ssu2g0338 892 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 620 747 IPR016181 -
Ssu2g0338 892 ProSiteProfiles Zinc finger PHD-type profile. 467 512 IPR019787 -
Ssu2g0338 892 Gene3D - 603 769 - -
Ssu2g0338 892 Pfam PHD-finger 469 510 IPR019787 -
Ssu2g0338 892 Pfam Tify domain binding domain 392 443 IPR032308 -
Ssu2g0338 892 PANTHER PHD ZINC FINGER PROTEIN 4 265 - -
Ssu2g0338 892 PANTHER PHD ZINC FINGER PROTEIN 311 815 - -
Ssu2g0338 892 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 4 265 - -
Ssu2g0338 892 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 311 815 - -
Ssu2g0338 892 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 604 771 IPR000182 GO:0016407
Ssu2g0338 892 Pfam Agenet domain 26 98 IPR008395 -
Ssu2g0338 892 SUPERFAMILY FYVE/PHD zinc finger 454 510 IPR011011 -
Ssu2g0338 892 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 462 510 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0338 Ssu-Chr2 21984321 21994418 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0338 341 708 PHD Transcription Factor Family AT5G58610 49.869 5.03e-116 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu2g0338 Agenet 2.3e-15 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0338 - - gmx:100818931 1105.12