Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu2g0338 | ATGGAGGATGTCAATGATCCTAAGAGCAACAAGAGTAAAAGAAGGGTTGCGAAAAAGCTTCAAGTCAATGAAGGGGTGGAGgTGAGGAGTGTAGAGGAGGGCTTTCTAGGATCTTGGCACCCTGGGACGGTTATCAAGTGTGGGAAGCTGAAGCGCCATGTCAGATATAAGAATGTTTTGAAAGATGATGGGTTGGATTATCTTGTGGATGTAGTGAGGGTTTCAAAAGCTTTGGATGGTGACAGTGGACCTTCAAACTGCAATAAGCGCGGGTTCATTAGGCCACTGCCTCCTTTGGTTGAGTTCGAGAGATGGGACCTTAAATTTGGTCTCTGTGTTGATGTGAGCTATCAGGAAGCTTGGTGGGAAGGTGTCATATTCGATCACTGTGATGGAATGGAGAAGAGGAGCGTGTTCTTCCCTGATTTGGGTGATGAAATGCAAGTTGGAATTCATCAATTGCGGATTACTCAGGACTGGGATGAAGTTACAGAGGAGTGGAAGCGACGAGGGAACTGGGTGTTTCTTGAATTGGTTGAGAAGTGCCAGAGGGAATCGTTTGTTGCAGTTTCAGCTAGGCAAATTTGGTATGATGTACAGGTAAAAAAGGAATTTGGCTTGATTGGAGAGTGGACATATAATGTGAAGGACCCCTGCAGAAATATGGTGATGGAGGTAGTTAATGACTACTTAACTCTTACAATAAAAGAACTTTTCTCAGTCCTAAACCTTCCGGGGAgtttattaaatgaaagaccAGAGCAGGAATCAGTTGAACCTATGGCTAATGATGACTTAAATATGACCTTGCCTGATAAGGAAATTGTTGTCCAGAAAGAAACTTCTCCTGCTGTTAAAGAGATCTTACCTGagtttcaaaaagaaattaccCCGGAAGGTGCTCGTGAAGTAGTTTCAGGTGCTAGGTGTTCTAAAAAAAGTAGATCAACTGCAAATCGAAAGCCGAAAAGCTTGAGGGATTCAAAGGCCAACGTACCTAAGTGCAATGGATTGCCTCTACGGGTGCTAAGATCAAATAAGAGGGTGCAAAAGGAGTCTGCTCCTCTTCCGTTACATCGTAAACCTCTAAATGTTTTGTCTTGGTTGATAGACAACCACTTGGTCTCGCCAAAGTCAAAGGTTTATTATAAAGCAAAAGGCAGGCAGTATACAGGGAGAATAACTCACAATGGAATCAAGTGTGACTGTTGTCGGACAATATACAGTTTTGTTGGCTTTGAAAATCATGCTAGTGGCAGTAGTACCTGCAGACCCTCTGCTAGTATCTTTTTGGAAGATGGTAGAACACTCTTAGATTGTCAGATACAAATAATGCAAGACCATAAGACAAGGGAAAGTAATGAAAAACCATTTAGTGATTTGACTCTAAACGAGAATGACTACATTTGTTCTGTTTGCTACTATGGTGGTGAACTTATTTTATGTGATCAATGCCCATCTTCATTTCATCAGATGTGTCTTGATTTGGAGAATATCCCTGATGGTGACTGGTTTTGTCCATCATGTTGTTGCGGGATTTGTGGCCAAAGCaaaattgatgatgaggatggaCATGTCCTTACTTGTGTTCAGTGTGAACATAAATATCACGTTAGGTGCCTTAAAAATGGAGCCGTAGATATATCAATATATCCAGAAAACTGGTTCTGCGGAAAAAACTGTGAAAAGATACATGAGGGCCTTCATCAACTATTAGGAAAGCCAGTTTCAGTGGGTGTGGCCCATCTAACTTGGACATTGTTGAAGTTTATCAAGCCTGACAGTTGTGATCTTGGTAGAATTAAAAGTGACAGCTTATTGGCAGAAAGTCACAGCAAACTCAATCTTGCTCTTTCGCTAATGCATGAATGTTTTGAGCCCCTAAAGGAATCTTTCTCTAGCAGAGATCTGGTGAAAGATGTTATATTCAGCAGAAGGTCAGAGCTTAACCGATTAAATTTCCAGGGTTTCTATACTGTACTACTTGAGAGAAATGAAGAACTTATTAGTGCGGCAACTGTTAGGGTCCATGGGAAGAAGGTAGCAGAAGTACCTCTTGTTGGTACCAGATTACAGTATCGTCGAAATGGAATGTGTCACGTTTTAATGAATGAGCTTGAAAAGAAGCTCATGCAATTAGGTGTGGAGAGGCTTGTCTTGCCTGCTGTTCCTAGTGTGCTAGAAACGTGGACTGGCTCTTTTGGCTTTGCAAAGATGACTAATTTTGAGAGATCTCAATTTCTGGACTATACTTTCCTAGATTTTCAGGATACCACCATGTGCCAGAAGCTGTTGATGAAGATTCCATCTCCAGATTCAGGTTTGTTAATAGCTGATTTTCAGGAGTCACAACAAAGATGTGATGTTTTCTCTGGAAGTTGTGTTAACTTCAATAAGCCTAGTCCAGTATCTGAAGTATCCAAAGTAGAAGAGATTGATAAAGGAGGGATGCTAATGGGGGATACTTGTGCAGGCAACAATGATCATCATGTTATTGGTGCTTTAGACCCAGTCACCATGGTGGAGCAACCAAGTCCTAGGGATCAACAGTGCCAGAACGGAACCAGCTCACAGTGCTTTCTTGAAAAACAAGCTTACAGGTACAATGGCCCGTATAAGTACCACTACACACGAAGGAAAGTGAAAAAGTCATGTGAAGGATTTGGCATGCCATTATGA | 2679 | 0.4095 | MEDVNDPKSNKSKRRVAKKLQVNEGVEVRSVEEGFLGSWHPGTVIKCGKLKRHVRYKNVLKDDGLDYLVDVVRVSKALDGDSGPSNCNKRGFIRPLPPLVEFERWDLKFGLCVDVSYQEAWWEGVIFDHCDGMEKRSVFFPDLGDEMQVGIHQLRITQDWDEVTEEWKRRGNWVFLELVEKCQRESFVAVSARQIWYDVQVKKEFGLIGEWTYNVKDPCRNMVMEVVNDYLTLTIKELFSVLNLPGSLLNERPEQESVEPMANDDLNMTLPDKEIVVQKETSPAVKEILPEFQKEITPEGAREVVSGARCSKKSRSTANRKPKSLRDSKANVPKCNGLPLRVLRSNKRVQKESAPLPLHRKPLNVLSWLIDNHLVSPKSKVYYKAKGRQYTGRITHNGIKCDCCRTIYSFVGFENHASGSSTCRPSASIFLEDGRTLLDCQIQIMQDHKTRESNEKPFSDLTLNENDYICSVCYYGGELILCDQCPSSFHQMCLDLENIPDGDWFCPSCCCGICGQSKIDDEDGHVLTCVQCEHKYHVRCLKNGAVDISIYPENWFCGKNCEKIHEGLHQLLGKPVSVGVAHLTWTLLKFIKPDSCDLGRIKSDSLLAESHSKLNLALSLMHECFEPLKESFSSRDLVKDVIFSRRSELNRLNFQGFYTVLLERNEELISAATVRVHGKKVAEVPLVGTRLQYRRNGMCHVLMNELEKKLMQLGVERLVLPAVPSVLETWTGSFGFAKMTNFERSQFLDYTFLDFQDTTMCQKLLMKIPSPDSGLLIADFQESQQRCDVFSGSCVNFNKPSPVSEVSKVEEIDKGGMLMGDTCAGNNDHHVIGALDPVTMVEQPSPRDQQCQNGTSSQCFLEKQAYRYNGPYKYHYTRRKVKKSCEGFGMPL | 892 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu2g0338 | 892 | MobiDBLite | consensus disorder prediction | 303 | 330 | - | - | |
Ssu2g0338 | 892 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 511 | 564 | IPR013083 | - | |
Ssu2g0338 | 892 | SMART | agenet_At_2 | 18 | 80 | IPR014002 | - | |
Ssu2g0338 | 892 | SMART | agenet_At_2 | 105 | 162 | IPR014002 | - | |
Ssu2g0338 | 892 | CDD | NAT_SF | 660 | 720 | - | - | |
Ssu2g0338 | 892 | SMART | PHD_3 | 511 | 561 | IPR001965 | - | |
Ssu2g0338 | 892 | SMART | PHD_3 | 469 | 510 | IPR001965 | - | |
Ssu2g0338 | 892 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 620 | 747 | IPR016181 | - | |
Ssu2g0338 | 892 | ProSiteProfiles | Zinc finger PHD-type profile. | 467 | 512 | IPR019787 | - | |
Ssu2g0338 | 892 | Gene3D | - | 603 | 769 | - | - | |
Ssu2g0338 | 892 | Pfam | PHD-finger | 469 | 510 | IPR019787 | - | |
Ssu2g0338 | 892 | Pfam | Tify domain binding domain | 392 | 443 | IPR032308 | - | |
Ssu2g0338 | 892 | PANTHER | PHD ZINC FINGER PROTEIN | 4 | 265 | - | - | |
Ssu2g0338 | 892 | PANTHER | PHD ZINC FINGER PROTEIN | 311 | 815 | - | - | |
Ssu2g0338 | 892 | PANTHER | AGENET DOMAIN-CONTAINING PROTEIN-RELATED | 4 | 265 | - | - | |
Ssu2g0338 | 892 | PANTHER | AGENET DOMAIN-CONTAINING PROTEIN-RELATED | 311 | 815 | - | - | |
Ssu2g0338 | 892 | ProSiteProfiles | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 604 | 771 | IPR000182 | GO:0016407 | |
Ssu2g0338 | 892 | Pfam | Agenet domain | 26 | 98 | IPR008395 | - | |
Ssu2g0338 | 892 | SUPERFAMILY | FYVE/PHD zinc finger | 454 | 510 | IPR011011 | - | |
Ssu2g0338 | 892 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 462 | 510 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu2g0338 | Ssu-Chr2 | 21984321 | 21994418 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu2g0338 | 341 | 708 | PHD Transcription Factor Family | AT5G58610 | 49.869 | 5.03e-116 | 375 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Ssu2g0338 | Agenet | 2.3e-15 | CL0049 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu2g0338 | - | - | gmx:100818931 | 1105.12 |