Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0334 ATGCCTGTAGGAGAAGCATTTTTGTCAGCTTTCCTTCAAGTTTTGTTTGACAGGTTGGCCTCAAAAAATGTTATAGAGGTTATTCTTGCAGGAGACAAAAGCAAATTCCTAAAGAAATTTCAGAAGACTCTGCTGCTCATCAAAGCAGTGCTTAATGATGCCGAGGACAAGCATGTAAAAAATGAGGCTGTGAGAATGTGGCTTGTTGAGCTTAAAGATGTTGCTTTTGAAGCAGAAGATATTCTTGATGAGTTTGCCAGTGAAGTATTGAAGAGGAGGTTGGAATCAATGTCTCAATCTCAAGTTCAAACCACCTTTACTCAAGTATGGAATTTTATTCCAACTTCTCTCAATCCACGTaatttaatgtttgatgttGAGATAGAATCTAAGATAAAGGTGATCACCGAGAGACTGGAAACTCTTGCAAATGAAAGGCATGAGCTTGGTTTAATTGAAGTCGCTGCTGGGTGTTCATACAAAATCAACGAAACAAGTTCCATGGTGAACGAGTCCTACATCTACGGCAGAGATTTGGACAAAGAGAAAGTCATCCGGCTGCTGATGGAGAATAGGCCAAGTGATGGTGATGAAGTCTTAGTCATTCCCATTGTGGGAATGCCAGGTGTTGGGAAAACAACATTGGCCCAGGTTGTGTTCAATGATAACGAGGTGAATACGCACTTTGAACTCAAGGCATGGGTATCTGTAGCTGTTGATTTTGATGTCAAGGTTTTAACTGGAAAGATTCTGGAGTCAACCACTTCCATAACCTGTGATTTCAATAACTTACATCAACTTCAAGTTAAACTCAAAGCAGCCTTGAGAGGCAAGAAGTTTCTGATTGTTCTGGATGATGTGTGGAACAAGAATTACAATGAATGGATTAAGCTGGTAGCTCCATTCAGAGGAGCTGCACGGGGAAGCTCGGTGATTGTAACAACAAGGAGTGCAGAAGTTGCCAACATGATGGGAACTGTTGAATCTCACTATGTCAACCAGTTATCTGATGAGGACTGTTGGTCAGTGTTTGTGCAGCATGCTTTTAGGAGTAAAATTATTGATGCAAATCAAGCCTTTGCAAAAATTGGTAAGAAGATTGCTGAGAAATGCAAAGGCTCGCCATTGACAGCAACAACACTTGCGGGTATTTTATCCTCACAGCAAGATGAAAGAGAGTGGGAAAACgtaatgaattttgaaatatgggATCTTGCAGAGAAGGAAAGTAACATCCTCCAAACATTAAGATTGAGTTATAATCAGCTTCCTTCATACCTGAAGCGCTGTTTTGCATACTGCTCCATACTACCAAAAGGCTTTGAATTTGAGGAGAAAGAGATAGTGTTGCTATGGATGGCTGAAGGACTTTTAGAGCAACAATCACAGAAGCAAATGGAAGATGTTGGCCATGAGTACTTTCAAGAGCTTCTCTCTGCATCACTTTTTCAAAGGTCAGCTAGCAACAGATCATTGTATGTAATGCATGACCTTATCAATGATCTAGCTCAATGGGTGGCTGGAGAGTCCTGTTTCAAATTGGACAATAATTTTCACTCTCacagacaaaagaaaaagaaaattaccaaAAGGACTCGGTATGCATCTTACATTGGTGGTGAATATGATGGTATTCAAATGTTTCAGTCCTTGAAAGAAGCCAAGTCATTAAGAACATTCCTCCCTTTAAAGCATTCAAGACTAGAAGAATGGTCGTACATAGCTAGTCATGTTCCATTTAAATTGTTACCTGAGTTAAGATGCTTAAGGGCATTATCATTGAGTGGATATTACATCAGTAAGCTGCCTAATTCGGTTAGCAATTTGAATCTTCTACGCTACCTGAATCTTTCTTGTAGTAAAATCAGACAGTTGCCAGAATCAATCTGCAGTCTATGCAATCTGCAAACATTACTACTGAGAGATTGTTTTAATCTTGAGCAGCTGCCATCAAACTTGGGTCATTTGATCAACCTACGTCACCTAGATATCACTAGAGCACATTCCTTAACAGGTATGCCGCATGGTATTGGTAAATTGACACATCTTCAaactttgtcaaattttgttataGGCTCAAGTGGGATAGGAGAATTGATGAAACTGTCAAATATCCGAGGAGGACTTTCTGTGTCCAGGCTAGAGCATGTGACTGACACTCAAGAGGCACGTGAAGCTATGTTAAATAAGAAGGTAGGCATTGATGTGCTGAAATTGAAATGGAGTTATTGTACGAATAATCAAACACATATTAAAAGAGCAAAAGACGTGCTTCAGATGTTACAACCTCACAAAAGTCTTGCAAAGCTTACTATTAACTGCTATGGTGGTACAAGTTTCCCAAAATGGATAGGAGATCCATCCTACAAGACGCTAGTGTTCTTAAAGTTGAAAGATTGTGCACATTGTACATCTTTGCCAGCTCTTGGAAACCTCCATGCCCTCAAAGAACTTTACATCATTGGGATGAAAGAAGTATGCTGCATTGATGGTGGGTTCTATGGTAATGCTTGCTTAAGACCTTTTCCTTCCTTGGAGAGACTACACTTTATGGACATGGAAAAATGGCAAAATTGGTTCCTCTCTGACAACAATGAGCAGAATgtcatattttcttctttgcagCAGCTTTTCATTCTGAGGTGTCCCAAACTTTTGGGTAAACTGCCAGAAAATCTCCCTTCCCTCAAACATGTAGTAGTTAAAGAATGTGAACAATTGCTGGTTACCATTTCAAGCCTTCCGCTGCTGTACAAACTAGAAATTGAAGGCTGCAAAGGCTTAGTCATTAATTGTGCAAGTGAATTCAATTCACTGAATTCCATGGCCGTTTCAAGAATCTTGGAGTTCACATTATTAATGGAGAGGTTGGTAGGGGCATTCAAAAATGTAGAAGAACTCAAAATTGTCAGTTGTGCTCTTGATGAAATAGTTCTTAATGATTTATGGGGAAATGAAGTTTGGCTTGAGAAGAATCCACATGGTTTGTCCTCCAAGCTCAGATTAATTGAGATTAGAAATTGCAATGCCATGAAATCTATGCCTAAAGTACTAATGGTCAACAGCCATTTTCTTGAATGCTTGTGCATATGTAACTGTGATTCTCTAGTCTCTGTCACAATGGATCAACTTCCTCCCTCTCTAAAATCATTGGAGATATCAAATTGCAAGAACTTAAGATGTTTACTGGATAATGGAACAAGCTCTTCTTCATCAATAATTATGCATGATGACAATGTACAGCACAGTGGCACAATCATTTCTCATTTGGAGTATTTATACATTGGCTGGTGTCCATCTCTCAATTGCATATCAAGAAGTGGTGAGTTACCTGAATCTGTCAAACTTTTGTTCATTTGGAACTGTTCAGAGCTATCATGCTTGTCAATGAAAGGCCAATTACCAATAAGTCTTGAAAAACTGGAGATTCAATCCCGTCCAAAGCTAGAGTCAATAGCAAACAGGTTACACGGAAACACCTCCTTGGAATCTATTCAGATATGGAACTGTGAAAACCTCAAATCCCTCCCTGAAGGATTGCAATTCCTTGTGAATTTAAAGGAAATCAAAATTATTGGTTGTCCAAGTTTGGCCTCCTTCCCAGAAGAAGGTTTGCCCACCTCTAGTCTGACCGAACTTTGCATCATGAGCTGTGAAAAACTAAAGGCCCTACCAGACTGCATGCACGATCTCGACTCGCTCAAAGAGCTGGAGATAGGATACTGCCCTAACATCCAATATTTTCCTGAAATAAACTTTCCAGACAATTTAACATCCCTTTGGATCAACGATCATAATGCCTGTGAAGCAATGCTCAACTGGGGTTTATACAAGCTCTCTTTTCTTAGGGACCTTACCATCATAGGTGGAAGTTTGTTTATGCCACTTGAAAAGCTGGGGACAATGCTTCCATCCTCTTTAAGTAGCCTCACTATTCAAGGTTTTCCACACTTGGAACACCTGTCATCAGAGGGCTTTCATAAACTCACCTCCCTATCTAGCCTAACCCTTCGAGATCTCTCAAATCTAAAATTCCTACCATCCTTGGGGTTTAAATACCTTACATCTCTCAAAGAACTTTCTATTTATAACTGTCCCAAGCTCTTCTGTTTATCAGAAAAGGGCCTTCCTTCCTCACTTTTGGAGCTATATATTCAAGACTGCCCTCTTCTGAAAGAACAGTGCAGGAAAGATAAAGGGAGAGACTGGTTGAAGATTGCTGACATCCCTTATGTTGAGATTGATGACAAATTTATCTATGACTCAGATGATGAGGATTGA 4281 0.3896 MPVGEAFLSAFLQVLFDRLASKNVIEVILAGDKSKFLKKFQKTLLLIKAVLNDAEDKHVKNEAVRMWLVELKDVAFEAEDILDEFASEVLKRRLESMSQSQVQTTFTQVWNFIPTSLNPRNLMFDVEIESKIKVITERLETLANERHELGLIEVAAGCSYKINETSSMVNESYIYGRDLDKEKVIRLLMENRPSDGDEVLVIPIVGMPGVGKTTLAQVVFNDNEVNTHFELKAWVSVAVDFDVKVLTGKILESTTSITCDFNNLHQLQVKLKAALRGKKFLIVLDDVWNKNYNEWIKLVAPFRGAARGSSVIVTTRSAEVANMMGTVESHYVNQLSDEDCWSVFVQHAFRSKIIDANQAFAKIGKKIAEKCKGSPLTATTLAGILSSQQDEREWENVMNFEIWDLAEKESNILQTLRLSYNQLPSYLKRCFAYCSILPKGFEFEEKEIVLLWMAEGLLEQQSQKQMEDVGHEYFQELLSASLFQRSASNRSLYVMHDLINDLAQWVAGESCFKLDNNFHSHRQKKKKITKRTRYASYIGGEYDGIQMFQSLKEAKSLRTFLPLKHSRLEEWSYIASHVPFKLLPELRCLRALSLSGYYISKLPNSVSNLNLLRYLNLSCSKIRQLPESICSLCNLQTLLLRDCFNLEQLPSNLGHLINLRHLDITRAHSLTGMPHGIGKLTHLQTLSNFVIGSSGIGELMKLSNIRGGLSVSRLEHVTDTQEAREAMLNKKVGIDVLKLKWSYCTNNQTHIKRAKDVLQMLQPHKSLAKLTINCYGGTSFPKWIGDPSYKTLVFLKLKDCAHCTSLPALGNLHALKELYIIGMKEVCCIDGGFYGNACLRPFPSLERLHFMDMEKWQNWFLSDNNEQNVIFSSLQQLFILRCPKLLGKLPENLPSLKHVVVKECEQLLVTISSLPLLYKLEIEGCKGLVINCASEFNSLNSMAVSRILEFTLLMERLVGAFKNVEELKIVSCALDEIVLNDLWGNEVWLEKNPHGLSSKLRLIEIRNCNAMKSMPKVLMVNSHFLECLCICNCDSLVSVTMDQLPPSLKSLEISNCKNLRCLLDNGTSSSSSIIMHDDNVQHSGTIISHLEYLYIGWCPSLNCISRSGELPESVKLLFIWNCSELSCLSMKGQLPISLEKLEIQSRPKLESIANRLHGNTSLESIQIWNCENLKSLPEGLQFLVNLKEIKIIGCPSLASFPEEGLPTSSLTELCIMSCEKLKALPDCMHDLDSLKELEIGYCPNIQYFPEINFPDNLTSLWINDHNACEAMLNWGLYKLSFLRDLTIIGGSLFMPLEKLGTMLPSSLSSLTIQGFPHLEHLSSEGFHKLTSLSSLTLRDLSNLKFLPSLGFKYLTSLKELSIYNCPKLFCLSEKGLPSSLLELYIQDCPLLKEQCRKDKGRDWLKIADIPYVEIDDKFIYDSDDED 1426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0334 1426 CDD AAA 175 287 - -
Ssu2g0334 1426 Gene3D - 426 504 IPR036388 -
Ssu2g0334 1426 Pfam NB-ARC domain 180 429 IPR002182 GO:0043531
Ssu2g0334 1426 PRINTS Disease resistance protein signature 274 288 - -
Ssu2g0334 1426 PRINTS Disease resistance protein signature 371 385 - -
Ssu2g0334 1426 PRINTS Disease resistance protein signature 201 216 - -
Ssu2g0334 1426 PRINTS Disease resistance protein signature 654 670 - -
Ssu2g0334 1426 PANTHER OS06G0667900 PROTEIN 8 1066 - -
Ssu2g0334 1426 PANTHER DISEASE RESISTANCE PROTEIN RP 8 1066 IPR044974 GO:0006952
Ssu2g0334 1426 SUPERFAMILY L domain-like 494 969 - -
Ssu2g0334 1426 Gene3D - 334 424 IPR042197 -
Ssu2g0334 1426 Pfam Rx N-terminal domain 7 99 IPR041118 -
Ssu2g0334 1426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 434 IPR027417 -
Ssu2g0334 1426 PANTHER DISEASE RESISTANCE PROTEIN RP 1047 1205 IPR044974 GO:0006952
Ssu2g0334 1426 PANTHER DISEASE RESISTANCE PROTEIN RP 1208 1377 IPR044974 GO:0006952
Ssu2g0334 1426 Gene3D Ribonuclease Inhibitor 520 927 IPR032675 -
Ssu2g0334 1426 Gene3D Ribonuclease Inhibitor 935 1084 IPR032675 -
Ssu2g0334 1426 Gene3D Ribonuclease Inhibitor 1253 1399 IPR032675 -
Ssu2g0334 1426 Gene3D Ribonuclease Inhibitor 1154 1252 IPR032675 -
Ssu2g0334 1426 Gene3D - 159 330 IPR027417 -
Ssu2g0334 1426 CDD RX-CC_like 37 144 IPR038005 -
Ssu2g0334 1426 SUPERFAMILY L domain-like 1088 1397 - -
Ssu2g0334 1426 Gene3D - 12 121 - -
Ssu2g0334 1426 PANTHER OS06G0667900 PROTEIN 1047 1205 - -
Ssu2g0334 1426 PANTHER OS06G0667900 PROTEIN 1208 1377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0334 Ssu-Chr2 21717117 21721835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0334 174 831 WRKY Transcription Factor Family AT5G45050 22.399 2.63e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0334 - - ccaj:109818945 1996.09