Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0330 atgAGACGGATGaataaagaaattgaagatGAGTTGCTTCCCAATGATCAGAGTGGGGCACAGCTGAATGATGAGGGTTATGAAGGAAGTGCCGGCGTTGTTCTGAAGAAAGGGCCATGGACATCGACTGAAGATGATATTTTGGTGGATTACGTCAAGAAGCATGGTGAGGGGAACTGGAATGCTATTCAGAAGCACACAGGGCTATTACGTTGCGGAAAAAGTTGTCGGCTGCGATGGGCTAATCACCTAAGGCCAAATTTAAAGAAAGGGGCCTTTACTGCAGAAGAGGAGCAGTTGATTGCTGAACTTCATGCCAAAATGGGAAACAAATGGGCACGCATGGCAGCACATTTGCCTGGTCGTACTGATAATGAGATAAAGAACTACTGGAACACCCGGATCAAGAGGCGTCAACGGGCTGGGTTGCCACTTTATCCTCCAGAAGTGTGTTTGCAAGCTTTGCAAGAGAGTCAGTGTAGCCAAAGCTCTGGTGGACTTAATGGTGGCAATAAAATGCATCCTGATTTCTTGCAGAAAAACAGTTATGAGATACATGATGCTATATTTGACAGTCTGAAGGATAATCAGGGAATCTTACCTTATGTGCCTGAGCTTTCTGATATTTCTGTTTATGGCAATATGCTGAAAGGTCTTGATTCTTCTCAGTATTGTAGTTTTGTACCACCAACATCACCTAAGCATAAGCGTCTTAGAGAGTCAACAATACCATTTATTGATTCCAGTGATATGAACAGAATTGGTTTATATCCATTTGATCAAATTTGGGATAATGATTCTGATAAGATTGCACAATCATTTGGAATGCAAGCACCACTTGATCCTGGTCCCTCCTCGCACAGCTCAATTTGTTACAGCCATTCACTTTCAAATGGCAATTCCTCTACTTCTAAGCCAACTTATGAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAACTTGATTTAGGTAGCTGGGGTTCATCTCCCCCACCTCCTTTGCTTGAGTCAGTTGATGATCTCATTCAGTCTCCTATGCCAATTAGTACACTGGAATCTGATTGTTCTTCTCCACAAAATAGTGGCCTGCTGGATGCTTTACTTTGTCAGGCAAAGACTCTAAGCAGTTCAAAGAACCATAATTCTGACAAGAGTTCAAATTCTTCTACTGCAACCCCTGGCGACAGAGCGGACAGCTCTGCTTTGAACGTGTACGAGACAGAATGGGAAGACTATGCTGACCCTGTATCTCCATTTGGCGCAACTTCAATATTGAATGAGTGCCCTGCTCTTAGTGCCAATGTGAATTCATTGGACGAACAGCTACCCATTCAGACCTTTAATGGCAACATTCCAAAATTAGAATCTGTTGACCAGGTTTGGACTCCTAACAGTGAAAATCAAACCTTGTACCTGTTGAATATTACTCGTCCAGACTTCTTGCTTGCTTCAGATTGGCATGATCTGGGTTCTGGGCATGGCAAGAACCAAGCCGTCACAACTGATGCTACAACGACCCTTCCTGGAGATGATTTAGCCACTGACCATAAGCATATGACTGCTGGAACTTCTAAGTCAAGTCAGGTGTGGGGGTTTGGTTCTTGTGCAACGGCAGTGAACAATATGCATGGTGTCTGTCGGCTGTCCGATCTTCGTTAA 1665 0.436 MRRMNKEIEDELLPNDQSGAQLNDEGYEGSAGVVLKKGPWTSTEDDILVDYVKKHGEGNWNAIQKHTGLLRCGKSCRLRWANHLRPNLKKGAFTAEEEQLIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCLQALQESQCSQSSGGLNGGNKMHPDFLQKNSYEIHDAIFDSLKDNQGILPYVPELSDISVYGNMLKGLDSSQYCSFVPPTSPKHKRLRESTIPFIDSSDMNRIGLYPFDQIWDNDSDKIAQSFGMQAPLDPGPSSHSSICYSHSLSNGNSSTSKPTYEAVKLELPSLQYPELDLGSWGSSPPPPLLESVDDLIQSPMPISTLESDCSSPQNSGLLDALLCQAKTLSSSKNHNSDKSSNSSTATPGDRADSSALNVYETEWEDYADPVSPFGATSILNECPALSANVNSLDEQLPIQTFNGNIPKLESVDQVWTPNSENQTLYLLNITRPDFLLASDWHDLGSGHGKNQAVTTDATTTLPGDDLATDHKHMTAGTSKSSQVWGFGSCATAVNNMHGVCRLSDLR 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0330 554 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 551 - -
Ssu2g0330 554 MobiDBLite consensus disorder prediction 1 25 - -
Ssu2g0330 554 Gene3D - 36 89 - -
Ssu2g0330 554 ProSiteProfiles Myb-like domain profile. 35 84 IPR001005 -
Ssu2g0330 554 Gene3D - 92 138 - -
Ssu2g0330 554 CDD SANT 39 84 IPR001005 -
Ssu2g0330 554 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Ssu2g0330 554 SUPERFAMILY Homeodomain-like 36 131 IPR009057 -
Ssu2g0330 554 CDD SANT 92 133 IPR001005 -
Ssu2g0330 554 Pfam Myb-like DNA-binding domain 90 133 IPR001005 -
Ssu2g0330 554 Pfam Myb-like DNA-binding domain 37 84 IPR001005 -
Ssu2g0330 554 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 84 IPR017930 -
Ssu2g0330 554 MobiDBLite consensus disorder prediction 377 401 - -
Ssu2g0330 554 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 551 - -
Ssu2g0330 554 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Ssu2g0330 554 SMART sant 36 86 IPR001005 -
Ssu2g0330 554 SMART sant 89 137 IPR001005 -
Ssu2g0330 554 MobiDBLite consensus disorder prediction 377 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0330 Ssu-Chr2 21575101 21578262 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0330 32 553 MYB Transcription Factor Family AT5G06100 44.549 2.72e-128 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu2g0330 Myb_DNA-binding 4.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0330 K09422 - gmx:100810415 906.36