Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0313 ATGGCCACTGAAAAGCTTAGATGTTGTGCAAAATTCCTTGAGAGCTCTAAACCCTACTTGGCCATGATCTCTTTACAGTTTGGCTATGCTGGCATGAACATTATCACTAAGGTTTCCCTCAACCAAGGCATGAGCCACTATGTCCTTGTGGTTTATCGCCACGCTTTTGCCACCGTTGTCATTGCTccttttgcctttatttttgaaagGAAAGGTCAACCAAAGATAACATTCCCAATTTTCATGCAAATTTTTATCCTAGCTCTTCTCGGGCCTGTGATTGATCAAAATTTCTACTATGCTGGGTTAAAGCTCACATCCCCAACCTTCTCATGTGCAATGAGCAACATGCTTCCGGCCATGACTTTTGTCATGGCATTTTTTTGCCGGATGGAGAAGATAAACATAAAGAAGGTGAGATGCATAGCAAAGATAGTGGGAACATTAGTGACAGTGGCAGGGGCTATGTTGATGACCTTATACAGAGGTCCTATAGTGGAGATGGTATGGGCCAAACACAGTCATCCACGCAATAAAACCAATGCAACAAGCACCACAGGATCATTGGACAAAGATTGGTTCTTAGGCTGCATCTTTCTTATCATTGCCACCCTTGCTTGGGCTTCCCTCTTTGTTTTACAAGCCAAAGCTATACAAACGTACAAGAATCATCAGCTAAGCCTCACTTCACTTGTGTGCTTTATAGGCACTCTTCAAGCTATTGCTGTTACTTTTGTTGTTGAGCACAATCCTTCTGTATGGAGAATTGGCTGGGATATGAACTTACTTGCTGCTGCCTATGCTGGGATTGTGAGCTCAAGCATATCATACTATGTACAAGGACTGGTAATTAAGAGGAAAGGGCCTGTCTTTGCAACTGCCTTTAGCCCTTTAATGATGATCATTGTTGCCATCATGGGCTCCTTTATCCTTGCGGAACAAATTTATCTCGGAGGTGTGATTGGGGCCATCTTAATTGTTATAGGTTTATACTCAGTTCTGTGGGGAAAGCACAAAGAACAAATAGAGAGTAAAGTGGCAGATGAAATTCCCTTGCCTGTAAAGGATGCTCAAATTGCTGTAATTGCAGGGCCTGTGATTGATGCCAGAGATAATTTTACCCAAGAAAAATATGGTCAGAAAGGAGAAGCCAACAACAAGCCCTCTTCAGTGCTAATAACCATGCCTATTCGTCCAGAGCCTCCCATGAAAGCTAACCAGGAGGCAAAGGCTTAA 1236 0.4223 MATEKLRCCAKFLESSKPYLAMISLQFGYAGMNIITKVSLNQGMSHYVLVVYRHAFATVVIAPFAFIFERKGQPKITFPIFMQIFILALLGPVIDQNFYYAGLKLTSPTFSCAMSNMLPAMTFVMAFFCRMEKINIKKVRCIAKIVGTLVTVAGAMLMTLYRGPIVEMVWAKHSHPRNKTNATSTTGSLDKDWFLGCIFLIIATLAWASLFVLQAKAIQTYKNHQLSLTSLVCFIGTLQAIAVTFVVEHNPSVWRIGWDMNLLAAAYAGIVSSSISYYVQGLVIKRKGPVFATAFSPLMMIIVAIMGSFILAEQIYLGGVIGAILIVIGLYSVLWGKHKEQIESKVADEIPLPVKDAQIAVIAGPVIDARDNFTQEKYGQKGEANNKPSSVLITMPIRPEPPMKANQEAKA 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0313 411 Pfam EamA-like transporter family 18 158 IPR000620 GO:0016020|GO:0016021
Ssu2g0313 411 Pfam EamA-like transporter family 195 334 IPR000620 GO:0016020|GO:0016021
Ssu2g0313 411 PANTHER WAT1-RELATED PROTEIN 12 372 - -
Ssu2g0313 411 MobiDBLite consensus disorder prediction 378 411 - -
Ssu2g0313 411 PANTHER WAT1-RELATED PROTEIN 12 372 IPR030184 GO:0016021|GO:0022857
Ssu2g0313 411 MobiDBLite consensus disorder prediction 378 392 - -
Ssu2g0313 411 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 160 - -
Ssu2g0313 411 SUPERFAMILY Multidrug resistance efflux transporter EmrE 241 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0313 Ssu-Chr2 19225983 19229181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0313 1 408 Nodulin-like Gene Family AT5G07050 64.988 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0313 - - gmx:100804390 743.806