Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0310 ATGAGGAAGAAGCTCGATACCCGTTTCCCTGCTGCTCGGATAAAGAAGATAATGCAAGCAGACGAGGATGTTGGAAAGATAGCACTGGCTGTGCCTGTTTTAGTTTCTAAAGCTCTGGAACTATTTTTGCAAGACCTTTGTGACCGTACTTATGAAATAACTCTTCAAAGAGGAGCAAAGACCATGAATTCATTGCATTTAAAACATTGTGTACAAAACTATAATGTCTTCGACTTTCTGAGGGACGTTGTCAGCAGGGTTCCTGACTACGGCCATGGCCATGGCCATGCTGAGGCTGGTGCTGATGATCGGGCCATTTCCAAAAGAAGGAAAGCTGTTGGTGATGATTGTAATGACAGTGATGAAGAGGCTAAGAGGAGCAAGATGCATGAGTTGAGCCACACTGGCAGTACTGGCAGGGGAAGAGGCCGAGGTAGAGGAAGAGGCCGTGGCCGAGGGCGACCACCTCTAGCAAGAGAGACACATCATCAGGATGCTGAATCTGAGCCTTGCACTTCAGTTCAGCCGGGCAACCCACAAAATACAAACCCAAGTGTGGCAGTATATGGGGGTTCTGAGTCAAAGGAGATACCAAAGGAGAATATTGCTGCAGTTCCTGTTGTAAGCACTGATTCTGATTCGCTCCGGAATATCGATCTGAACGCCAGTACAAATGAAAACGATGACAAAAAGGCTAGCATGGCAGCTGATGCCTCGTTGCCTGAACCTCCGACAGAGAGCAAGCATGAAGAGATACCGGGGTGGTCCCTTTCTGATGTGGACAAGATGGCCATTGATTCAATGCAGCTTGCGCAGCTCGGTAGGCCACTAGAAGAGGATGAGGAAGATTATGATGAGGAGGAAGGGTAA 870 0.4805 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQNYNVFDFLRDVVSRVPDYGHGHGHAEAGADDRAISKRRKAVGDDCNDSDEEAKRSKMHELSHTGSTGRGRGRGRGRGRGRGRPPLARETHHQDAESEPCTSVQPGNPQNTNPSVAVYGGSESKEIPKENIAAVPVVSTDSDSLRNIDLNASTNENDDKKASMAADASLPEPPTESKHEEIPGWSLSDVDKMAIDSMQLAQLGRPLEEDEEDYDEEEG 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0310 289 MobiDBLite consensus disorder prediction 207 222 - -
Ssu2g0310 289 MobiDBLite consensus disorder prediction 91 137 - -
Ssu2g0310 289 MobiDBLite consensus disorder prediction 153 167 - -
Ssu2g0310 289 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Ssu2g0310 289 MobiDBLite consensus disorder prediction 168 189 - -
Ssu2g0310 289 PANTHER HISTONE SUPERFAMILY PROTEIN 1 287 - -
Ssu2g0310 289 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Ssu2g0310 289 MobiDBLite consensus disorder prediction 91 256 - -
Ssu2g0310 289 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 287 - -
Ssu2g0310 289 SUPERFAMILY Histone-fold 4 96 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0310 Ssu-Chr2 19170685 19178332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0310 1 275 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.027 2.41e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Ssu2g0310 CBFD_NFYB_HMF 2.2e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0310 K21752 - gmx:100814712 459.529