Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0299 ATGAACACCACAATCATTGCCAACCACAAACAAGAAAAGTGTAAGCATGAAGACATAAGTACTATAGGAGTACATGTGGATGAAGGTACTAGTAAGTCAAGAAAATTAATCATTGCCTTAAGTGTGCTGGGGTTAGTGGCTTTACTATGTTTCAGTGTCTACTACTTCTGGTTCAGGAATAGAACTAGAAAAGgGCAACAGCTCGTGATCATAATGCCAGAGAAAGTTATGGCACATTTCTTTTCTGTTCGTAATGTGAAACTGGATTCAGGATATGATATCCatgatgaaaagaaaaaacaacttGATTGGAAATTAAGATTAAGCATTATCAATGGAATAGCAAGAGGTATTTTATACCTTCACGAGGACTCTCGACTCAGAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGACGATGAGATGAATCCCAAAATATCAGATTTTGGATTGGCAAGAGCATTTGAAAGAGGACAGAACCAGGCAAACACAAAACGAGTAATGGGCACTTAG 522 0.3602 MNTTIIANHKQEKCKHEDISTIGVHVDEGTSKSRKLIIALSVLGLVALLCFSVYYFWFRNRTRKGQQLVIIMPEKVMAHFFSVRNVKLDSGYDIHDEKKKQLDWKLRLSIINGIARGILYLHEDSRLRVIHRDLKASNVLLDDEMNPKISDFGLARAFERGQNQANTKRVMGT 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0299 173 SUPERFAMILY Protein kinase-like (PK-like) 97 173 IPR011009 -
Ssu2g0299 173 Gene3D Transferase(Phosphotransferase) domain 1 88 173 - -
Ssu2g0299 173 ProSiteProfiles Protein kinase domain profile. 1 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0299 173 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 25 70 - -
Ssu2g0299 173 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 83 173 - -
Ssu2g0299 173 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 83 173 - -
Ssu2g0299 173 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 25 70 - -
Ssu2g0299 173 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Ssu2g0299 173 Pfam Protein kinase domain 98 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0299 Ssu-Chr2 18656529 18659097 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0299 74 173 Receptor kinase-like Gene Family AT4G05200 62.376 6.52e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu2g0299 Pkinase 3.3e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0299 - - gmx:100796972 149.443