Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0295 ATGCTTCACATACTGTTTTGTTGTTCAAATCTCTTCTCTGTTCTTGTGTTGTCAGATGTTGAGAAAAGAAAGCAATTCGATTGGAAACTAAGATTAAGGATTATCAATGGAATAGCAAAAGGTATTTTATATCTTCATGAGGACTCTCGACTCAGAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGACCATGAGATGAATCCCAAAATATCAGATTTTGGATTGGCAAGGGCATTTGAAAGAGGACAGAACCAGGCAAATACAAAACGAGTAATGGGCACTTATGGATACATGGCTCCAGAGTATGCTATGGAAGGATTGTTTTCAATGAAATCTGATGTTTTCAGCTTTGGAGTTCTTGTTCTAGAAATCATTTGTGGAAAAAAGAATAGTGGTTTTTTTCTATCAGAACATGGTCAAAGTCTTCTTTTATATACTTGGAGAATGTGGTGCGAAGGAAAATGTTTGGAATTGATGGATCCAGTGCTAGAAAATTCCTACATAGCCAATGAAGTTGTGAAGTGCATACAGATTGGTTTGTTGTGTGTTCAAGAAGAAGCAGCTGATAGACCAACCATGTCCATTGTTGTTGTATTGTTAGCAAGTGACACAATGGCCATTCCAAAACCTAACAAACCTGCATTCTCTGTTGGAAGAATGACCTCAGAGGAAACATCTACTTTAGAAGGTTCCAAAAGTGTTTCCATTAATGATGCATCAATCTCTAGTATTGTACCAATGTAA 753 0.3652 MLHILFCCSNLFSVLVLSDVEKRKQFDWKLRLRIINGIAKGILYLHEDSRLRVIHRDLKASNVLLDHEMNPKISDFGLARAFERGQNQANTKRVMGTYGYMAPEYAMEGLFSMKSDVFSFGVLVLEIICGKKNSGFFLSEHGQSLLLYTWRMWCEGKCLELMDPVLENSYIANEVVKCIQIGLLCVQEEAADRPTMSIVVVLLASDTMAIPKPNKPAFSVGRMTSEETSTLEGSKSVSINDASISSIVPM 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0295 250 Gene3D Transferase(Phosphotransferase) domain 1 9 212 - -
Ssu2g0295 250 ProSitePatterns Serine/Threonine protein kinases active-site signature. 53 65 IPR008271 GO:0004672|GO:0006468
Ssu2g0295 250 ProSiteProfiles Protein kinase domain profile. 1 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0295 250 Pfam Protein tyrosine and serine/threonine kinase 22 200 IPR001245 GO:0004672|GO:0006468
Ssu2g0295 250 SMART serkin_6 1 166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0295 250 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 248 - -
Ssu2g0295 250 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 17 248 - -
Ssu2g0295 250 SUPERFAMILY Protein kinase-like (PK-like) 10 229 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0295 Ssu-Chr2 18344813 18430978 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0295 17 249 Receptor kinase-like Gene Family AT4G23150 55.230 1.04e-89 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu2g0295 PK_Tyr_Ser-Thr 3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0295 - - gmx:100792758 405.986