Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0263 ATGGCTGCTTCGGTTGGAGGGAATGCGACCACGAACACTAGCGCGGGTGTGGAGTGGCACGTGCGTCCTCCAAACCCTAAGAACCCCATCGTCTTCTTCGATGTAACCATCGGTAACATTCCCGCCGGTCGAATCAAGATGGAGCTCTTCGCTGATATTGCGCCCAAAACCGCTGAGAATTTCAGGAAAGCAGGACTATCTGTTGGTTACAAGGGTTGTCAATTTCATAGAGTGATTAAGGATTTTATGATTCAGGCTGGTGATTTTGTGAAGGGTGATGGTAGTGGGTGTGTTTCCATCTATGGACTCAAGCTTGATGATGAAAACTTTACTGCCAAACACACTGGCCCTGGCCTTCTGTCGATGGCAAATAGCGGACCAAATACCAATGGTTGTCAGTTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTCGTTTTTGGGAGAGTGCTTGGAGACGGTCTTTTGGTTGTCAGGAAGATTGAGAATGTGGCAACTGGACCCAATAACCGGCCAAAATTAGCTTGTGTCATTGCTGAATGCGgtgaaatgtaa 567 0.4638 MAASVGGNATTNTSAGVEWHVRPPNPKNPIVFFDVTIGNIPAGRIKMELFADIAPKTAENFRKAGLSVGYKGCQFHRVIKDFMIQAGDFVKGDGSGCVSIYGLKLDDENFTAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIAECGEM 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0263 188 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 33 186 IPR002130 GO:0000413|GO:0003755
Ssu2g0263 188 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 32 187 IPR002130 GO:0000413|GO:0003755
Ssu2g0263 188 SUPERFAMILY Cyclophilin-like 19 188 IPR029000 -
Ssu2g0263 188 CDD cyclophilin_ABH_like 29 186 - -
Ssu2g0263 188 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 70 87 IPR020892 GO:0003755|GO:0006457
Ssu2g0263 188 Gene3D - 18 188 IPR029000 -
Ssu2g0263 188 PIRSF Peptidylpro_ismrse 10 188 IPR024936 GO:0003755
Ssu2g0263 188 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 75 87 IPR002130 GO:0000413|GO:0003755
Ssu2g0263 188 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 IPR002130 GO:0000413|GO:0003755
Ssu2g0263 188 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 133 145 IPR002130 GO:0000413|GO:0003755
Ssu2g0263 188 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 146 161 IPR002130 GO:0000413|GO:0003755
Ssu2g0263 188 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 49 64 IPR002130 GO:0000413|GO:0003755
Ssu2g0263 188 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE D-RELATED 25 188 - -
Ssu2g0263 188 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 25 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0263 Ssu-Chr2 15339249 15347539 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0263 25 185 U-box Gene Family AT5G67530 42.945 7.65e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0263 K09567 - gmx:100305521 362.073