Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0257 ATGATATTGAGAAACCTGGGGCCTATTATTAAAGATGCTTCAatctttgtttctaagttcttGTGTTTTCTACATGTTACCAACACCTATCTGATCGGCTCTGTTACAACCTTTGGTCCTAGCATGCTTCCTGCAATCGATTTGACAACAAGTGTGTTCTTAATGGAAAAGATCTCAACCCGGTTTGGTAAAGTTGCTCGTGGAGATATTGTAGTCTTGCGCCATCCTCAAGACCCTAGACGTTTCATGACCAAACGCGTGGTTGGATTGGAGGGTGATAGTGTTACATACATTTCCAATCCTGAGACCTATAGATTGGAGGGTGATAGTTTTACATACATTTCCAATCCCGAGAACAATAATAAGCATGAGACTATTGTGGTTCCAATTGATCACGTTTGGGTAGAGGGAGATAACAAGTATAAGAGCTATGATTCAAGAAAATTTGGTCCTGTTCCTTATGACCTTATTCAGGGCAAGATGTTCTGGAGGATATCACCACTTAAAGATTTTGGACCTTTCTGGAATAAATGA 534 0.3895 MILRNLGPIIKDASIFVSKFLCFLHVTNTYLIGSVTTFGPSMLPAIDLTTSVFLMEKISTRFGKVARGDIVVLRHPQDPRRFMTKRVVGLEGDSVTYISNPETYRLEGDSFTYISNPENNNKHETIVVPIDHVWVEGDNKYKSYDSRKFGPVPYDLIQGKMFWRISPLKDFGPFWNK 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0257 177 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 106 176 - -
Ssu2g0257 177 CDD S26_SPase_I 35 160 IPR019533 GO:0004252|GO:0006465
Ssu2g0257 177 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 6 102 - -
Ssu2g0257 177 TIGRFAM sigpep_I_bact: signal peptidase I 20 168 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ssu2g0257 177 Gene3D Umud Fragment, subunit A 27 176 - -
Ssu2g0257 177 Pfam Signal peptidase, peptidase S26 20 163 IPR019533 GO:0004252|GO:0006465
Ssu2g0257 177 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 106 176 - -
Ssu2g0257 177 PRINTS Bacterial leader peptidase 1 (S26A) family signature 30 46 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ssu2g0257 177 PRINTS Bacterial leader peptidase 1 (S26A) family signature 83 95 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ssu2g0257 177 PRINTS Bacterial leader peptidase 1 (S26A) family signature 128 147 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ssu2g0257 177 SUPERFAMILY LexA/Signal peptidase 29 175 IPR036286 -
Ssu2g0257 177 ProSitePatterns Signal peptidases I signature 3. 133 146 IPR019758 GO:0004252|GO:0016021
Ssu2g0257 177 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 6 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0257 Ssu-Chr2 15169156 15170300 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0257 42 174 MADS-box Gene Family AT1G29960 41.353 2.53e-33 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0257 K09647 - gmx:100805997 269.24