Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0247 ATGCAAACCCTCAGTCGCTTGGATGGGCCAAAACCCTTCACATATGATGTGTTGCTCAGCTCCGCTGAAGATACATTCGCCGGTTTTACGGGCTTCCTCCTCAAGTCTCTCGAGGATCGGGGATTCCGCACCAAGGTAATCGTAGATCACCGGCAGCTTAAGAAAGAGGAAATTGAAGGGTTCAGgattttcattattgttttatCCGATCGCTATGCACATTGTCAAATTCGCTTGGAAAAATTTGCCGAGATCGTAAATGAGTTCGGTAGGCGAGAAGGTCGACGGGTTTTTCCAGTTTTCTACGACGTGGATGCGTCTGATGTGCGATATCAGAAAGGTAGTTATGAAATAGTGTCGGCTGCTCATAGGAACGATGTCGAGCCTAAGAGGTTAGAGAAGGCTCTGACGGCTCAGAGTCTGACCGACGGAGCTGACTTTCATGGCTGGTCTTTCAAACGGTCCGGTAACATATCTGAATGTCAGATTATTGACGAGATCACTCAGAAGGTCTCTGAACATGTTGCTTGCTCAGTTGGACTACATCGTCGAGTGGAAAAAGTTAATGACCTTTTGTATTCCGGATCTGACGATGGAGTGCAGAGGGTTGGGATATGTGGAGAAGCCGGAATAGGCAAAACAACAGTAGCTCGTGGAGTCTATCTCTCCAATGGGGGAAACAGATTTGACTGTTATTGCTTTATTGATAATGTAGGAGAATGTTTAAAGAAACATGGATTAGTAGATCTCATCAGGAAGCTTCTCTCTGAAATAATTCATGACAGTGATATCAAGTTTGGAAATGCCGACAAAGGATTGTCAATATTAGAGCAAAAAGTCAAACAGAATAAGCTTTTTCTTGTTCTTGAAGACATTTTTGATCAGGAGCAGTTGCAAGTCATTGTTAAACTAACTAACCAGTTTAGTTCCGACAGCAAAGTAATCATTACAGCCGAGGAGAATTGTTTCCTACAATGTcaggagattaaaatatacgaGGTAGAAAGGTTCAGCACAGTAGAGGCTCTTGAATTGCTTAGTTTGAAAGCTTCTAATTCTAAGAAATTGAAATGCGATTATGTGGGCATTTTAGAAGAAGCAGAACCTCATGCTTCTGGGGTTCCATTCAATCTGGAAGTGATAGGTTCTCACTTAGGTGGAAAGAGTCCACAAGAATGTAGTTCTCTATTAtatcaatacaaaaaaattcGAAATGAAAGGAAACAAAGGATAGTTCAAATAAGCTTTGATGCTTTGGAGGAAGATCAGAAGAAGATGTTAATTCACATTGCAATTTGCCTCAATGGACCAAAATTGGCAATTAGTAAACTTCTTGATGTCTTCTTGGAAAAAGATATTAAAGCATTGCTTGAtaaatctcttataaaaaatgagtatggtCAAGTGGCATTACACGACTTGACACGGAACGTGGTTAGAGATAATGCCCCACCACAATATCATTTTAAACAATGTCACTTTCAATTGTTTGAAGAAAATACGGAGAATGGCAAGCAAGAAATCCAACCTGCCTCAAGTGATGGAAGTGTAGCTTGCAATCTGATGGAATTGGAAGAAAGTACAGAGTGTGGCAAACAAGAAATCCGATTTGCCTCAAATGATGGAAGCATGCTTTATGATTTGGtggaattgaaagaaaatacaATGCGCTATGGAGGTGATTCTTGTTGGAAGGCTAAGACAAAGAGCTACAAGCTTCATGAAGAGCTCAACAACCTGATTCAGCATCCTTGA 1755 0.3926 MQTLSRLDGPKPFTYDVLLSSAEDTFAGFTGFLLKSLEDRGFRTKVIVDHRQLKKEEIEGFRIFIIVLSDRYAHCQIRLEKFAEIVNEFGRREGRRVFPVFYDVDASDVRYQKGSYEIVSAAHRNDVEPKRLEKALTAQSLTDGADFHGWSFKRSGNISECQIIDEITQKVSEHVACSVGLHRRVEKVNDLLYSGSDDGVQRVGICGEAGIGKTTVARGVYLSNGGNRFDCYCFIDNVGECLKKHGLVDLIRKLLSEIIHDSDIKFGNADKGLSILEQKVKQNKLFLVLEDIFDQEQLQVIVKLTNQFSSDSKVIITAEENCFLQCQEIKIYEVERFSTVEALELLSLKASNSKKLKCDYVGILEEAEPHASGVPFNLEVIGSHLGGKSPQECSSLLYQYKKIRNERKQRIVQISFDALEEDQKKMLIHIAICLNGPKLAISKLLDVFLEKDIKALLDKSLIKNEYGQVALHDLTRNVVRDNAPPQYHFKQCHFQLFEENTENGKQEIQPASSDGSVACNLMELEESTECGKQEIRFASNDGSMLYDLVELKENTMRYGGDSCWKAKTKSYKLHEELNNLIQHP 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0247 584 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 429 IPR027417 -
Ssu2g0247 584 Pfam NB-ARC domain 184 409 IPR002182 GO:0043531
Ssu2g0247 584 SMART till_3 14 142 IPR000157 GO:0007165
Ssu2g0247 584 Gene3D - 337 420 IPR042197 -
Ssu2g0247 584 PRINTS Disease resistance protein signature 371 385 - -
Ssu2g0247 584 PRINTS Disease resistance protein signature 202 217 - -
Ssu2g0247 584 PRINTS Disease resistance protein signature 279 293 - -
Ssu2g0247 584 Gene3D - 162 330 IPR027417 -
Ssu2g0247 584 ProSiteProfiles TIR domain profile. 13 136 IPR000157 GO:0007165
Ssu2g0247 584 SUPERFAMILY "Winged helix" DNA-binding domain 409 482 IPR036390 -
Ssu2g0247 584 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 491 - -
Ssu2g0247 584 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 491 IPR044974 GO:0006952
Ssu2g0247 584 Gene3D - 1 139 IPR035897 -
Ssu2g0247 584 Pfam TIR domain 15 138 IPR000157 GO:0007165
Ssu2g0247 584 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 136 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0247 Ssu-Chr2 14542014 14545192 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0247 179 480 WRKY Transcription Factor Family AT5G45050 25.974 1.20e-20 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0247 - - gmx:102665383 506.908