Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0239 atgagagtgTTGAATTTTGACAAGTGTGAATTTATAACACGGATACCTGAGTTATCTGGtgccccaaatttaaaagaattatctcTTGTCTTTTGTGAGAATTTAGTTGAAATTCATGAATCGGTTGGATTCCTAGATAAACTTGAAATCTTGAACTTTGAGGGTTGCAGCAAGCTTTGTACTTTTCCGCCAATCGAGTTGACCTCTCTTGAAAGTATCAACCTTTCATATTGTTCAAGTCTTGTGAGTTTTCCTGAAATATtaggaaaaatggaaaacataACACATCTTTCTTTGGAATACACTGCCATAAGTAAATTGCCACATTCAATTAGGAAACTTGTCCGACTTCAAAGCTTAGAACTGCGCAACTGTGGAATGGTTCAGTTACCAAGCAGCATTGCCACATTGCCAGAACTTGAGGTGTTGAGTATTTGGCAATGTGAAGGGTTGCAATCATCAAAACAGGAAGAATATGTAGAAAATGAGAGCTTAATGattgaagtgaaaaaataa 516 0.3217 MRVLNFDKCEFITRIPELSGAPNLKELSLVFCENLVEIHESVGFLDKLEILNFEGCSKLCTFPPIELTSLESINLSYCSSLVSFPEILGKMENITHLSLEYTAISKLPHSIRKLVRLQSLELRNCGMVQLPSSIATLPELEVLSIWQCEGLQSSKQEEYVENESLMIEVKK 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0239 171 Gene3D Ribonuclease Inhibitor 1 65 IPR032675 -
Ssu2g0239 171 Gene3D Ribonuclease Inhibitor 66 165 IPR032675 -
Ssu2g0239 171 SUPERFAMILY L domain-like 2 153 - -
Ssu2g0239 171 PANTHER NB-ARC DOMAIN PROTEIN 11 131 - -
Ssu2g0239 171 Pfam Leucine rich repeat 69 125 IPR001611 GO:0005515
Ssu2g0239 171 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 131 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0239 Ssu-Chr2 14272185 14273304 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0239 12 148 WRKY Transcription Factor Family AT4G12020 42.446 2.11e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0239 - - gmx:100817027 276.559