Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0230 ATGCCAGCCTTTACTCGCTTGGTTGTGCCGTTAAAATATGACGTGTTCCTGGGCTTTAGAGGCCTAGATACCCGCTACACTTTTACTGGTACCCTCTACAATGCTCTCGTCAATCGGGGATTCCGCACCTTCATGGATAAACCGGAAATGGACAAAGGCACCAGAATCACGGTAGAAATTTCCAAGGCAATTGAGGTGTCCAGGATTTTTATTATCGTTTTGTCCGAGAACTTTGCTTCTTCTTCATTTTGCTTAGAAGAAGTTGTTGAGATTCTGAAGTTCCCTAAGGGGAAAGGTCGATGGGTTTTGCCGGTTTTCTACTGCGTGGATCCGTCTGATCTGATTGCTACTTATGAACAAGCATTGACTGATTTGAAGGAGTGGTATGAGGATGAGAAGATAGAAGAATGGAGGACCGCTTTGAGTAAATTAGCTAAGTTTCCTGGCTGCCGTCTCAAACGGGACAACAATATATTTGAATGCCAACATATTGAGGATATCCTTAAAGAGGTCTCTAGACATGTTCCTTGTCAAATTGGACTTCTTGATCGGACAAATAAAGTTCAAGAGCTTTTGTGCTCTGGATTAGATCGAGGCCACATGATTGGTATATGTGGAGAAGCCGGAACTGGTAAGACAATGGTAGCTCATGAAGTTTTTAACAGCAATGCTGGCAGGGGATTTGATCACGCTTTCTCTTTTGATGACGTTGGAGAAATTTTAAGTAACTCTGGACATGTTAGAGAAGAAATGTCAACCCTCATCagaaaaaagctttttataatttttgaagatattaaaCATTCCGAGCAGTTGGATAACATTGTGGAACTAACTAAGCAGCTTGGTTCTGGCAGCATAGTCATCATTATATCTCAAGATAAGTGTTTGCTTGAAAGATGCGGGATCAGAAGTATATATGAAGTAGAAAGGTTTAGTGAGACAGAAGCTAATCAATTGCTTGTTTTGAAAGCTTTTAATTCTCCAACTGTTAGTCCtaaatatgtgaaaattttaaagcgTATTGAGGCTTATGCCCGTGGTCATCCTAGGATATTGGAACTAATAGGTTCCAACTTGAGTGGAAAATCCATAGAAGAATGTGAATTTGCATTAGAAAAGTATGAATCAATAACAAATAGAGACATCCAACAGATAGAAGAAGAAAGCTTTAATGCTTTGGAGAAATGTCAGCAGGAGATGTTAATTCACATTGCATCATTTGACAGAGAATTCTTATTGGTAGATGTTGAAGCTAAACTTCACAATAAGTATAAAGTCTGTCCCAGAATAGATATTAGAGTGTTGCTCGATaaatctcttataaaaattaatcagcATGGTCAGGTGACATTGCATAACTCTACACGGGACATGATTAAAGATAAAGTTTCATGTTTTAAGgctaTGAAGCATGGACATGGGCAGCGCAagtcaaatgaaattaaatatgagCAACATGATGTGCAATACAAAGAAGACAGTTTGGAATTGGGACCATCCCAAACAAAGAATCCTATGTGTGCGATGATGCTGGGAATGGCGAGGGGAGTTCGAAGATGGATTTGCTGCGATGGGTCAGGGGaTTTGTTTCTATTCGGGCAATGGAGAGTGATTCCTGTTCCTGCAACCAGCGATGCCTTCCATTTTTACTCCAAGGAGCCcagGAGTATGGAGAGCAATAAATCCAACATGTCTCAAATGATGGAAGCAGGACTTGGGATCCAATGGAATTGGAATGTCAATTACCATATCAACATCAGTTTTCCTCCTCTTTACAGGATGCTCTATGATGTTTTTCAGgctaTGAAGCATGGACATGGGCAGCGTAagtcaaatgaaattaaatatgagCAACATGATGTGCAATGCAAAGAAGACAGTTTGGAATTGGGACCATTCCAAACAAAGAATCCTGTGTCCGAGTGA 1929 0.3826 MPAFTRLVVPLKYDVFLGFRGLDTRYTFTGTLYNALVNRGFRTFMDKPEMDKGTRITVEISKAIEVSRIFIIVLSENFASSSFCLEEVVEILKFPKGKGRWVLPVFYCVDPSDLIATYEQALTDLKEWYEDEKIEEWRTALSKLAKFPGCRLKRDNNIFECQHIEDILKEVSRHVPCQIGLLDRTNKVQELLCSGLDRGHMIGICGEAGTGKTMVAHEVFNSNAGRGFDHAFSFDDVGEILSNSGHVREEMSTLIRKKLFIIFEDIKHSEQLDNIVELTKQLGSGSIVIIISQDKCLLERCGIRSIYEVERFSETEANQLLVLKAFNSPTVSPKYVKILKRIEAYARGHPRILELIGSNLSGKSIEECEFALEKYESITNRDIQQIEEESFNALEKCQQEMLIHIASFDREFLLVDVEAKLHNKYKVCPRIDIRVLLDKSLIKINQHGQVTLHNSTRDMIKDKVSCFKAMKHGHGQRKSNEIKYEQHDVQYKEDSLELGPSQTKNPMCAMMLGMARGVRRWICCDGSGDLFLFGQWRVIPVPATSDAFHFYSKEPRSMESNKSNMSQMMEAGLGIQWNWNVNYHINISFPPLYRMLYDVFQAMKHGHGQRKSNEIKYEQHDVQCKEDSLELGPFQTKNPVSE 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0230 642 ProSiteProfiles TIR domain profile. 11 175 IPR000157 GO:0007165
Ssu2g0230 642 CDD AAA 179 304 - -
Ssu2g0230 642 SUPERFAMILY "Winged helix" DNA-binding domain 382 452 IPR036390 -
Ssu2g0230 642 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 149 IPR035897 -
Ssu2g0230 642 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 10 465 - -
Ssu2g0230 642 Gene3D - 311 402 IPR042197 -
Ssu2g0230 642 Pfam TIR domain 12 175 IPR000157 GO:0007165
Ssu2g0230 642 Gene3D - 10 170 IPR035897 -
Ssu2g0230 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 404 IPR027417 -
Ssu2g0230 642 SMART till_3 12 147 IPR000157 GO:0007165
Ssu2g0230 642 PRINTS Disease resistance protein signature 201 216 - -
Ssu2g0230 642 PRINTS Disease resistance protein signature 346 360 - -
Ssu2g0230 642 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 465 IPR044974 GO:0006952
Ssu2g0230 642 Gene3D - 171 306 IPR027417 -
Ssu2g0230 642 Pfam NB-ARC domain 251 394 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0230 Ssu-Chr2 13486996 13494798 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0230 4 452 WRKY Transcription Factor Family AT4G12020 23.140 3.81e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0230 - - gmx:106795499 575.474